Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1803 118 9e-22 seq51994 87.8 1e-12 >seq1803 Length=26599 Score = 118 bits (130), Expect = 9e-22 Identities = 139/183 (76%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 1963 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1904 Query 30210 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 |||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 1903 TCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 1845 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30328 |||| ||||| || ||||| | ||||| ||||||| ||||| || || || ||||| | Sbjct 1844 CCCAAATCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC-CT-ACGAAAC 1787 Query 30329 ACA 30331 ||| Sbjct 1786 ACA 1784 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 5417 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 5358 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || ||||| || ||||||||||| || || || || || || || || | Sbjct 5357 ACTCCTAGTCCCATATCTCCCGACCTCTGATAAAGTTGGCAAGACAGTTCACCATTTAGA 5298 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| | |||||| || Sbjct 5297 ACATAGAACTGGCAAAGGGCATGGCATGGAGGTAAAGCCATCAG 5254 >seq51994 Length=31206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || |||||||||||||| |||| || || |||||| | | || | |||||| || || Sbjct 3129 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAGGGACGATTCTTCTCAGGA 3070 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 3069 ATGGAGAACCAGGTTTTTTTACCCATTATCAGAGCATTCTGTTTACCT 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408298967912486