Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq514 104 2e-17 >seq514 Length=5730 Score = 104 bits (114), Expect = 2e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| || || || |||| |||||| ||||| ||| || || || || ||||| ||||| Sbjct 5107 GCCACCTCTGAGGCGCAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 5166 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| ||||||||||||||| ||||| | ||| ||||| | ||| Sbjct 5167 CAGGGTGCGCCCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGG 5226 Query 48659 AACGCCCTCCTTGTC 48673 || |||||||||||| Sbjct 5227 AATGCCCTCCTTGTC 5241 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||||||||| || |||| ||| | || || ||| || || || || ||||| ||||| Sbjct 5328 GCCGCCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 5387 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || ||||| ||||| | ||| ||||| | ||| Sbjct 5388 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 5447 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 || |||||||||||| ||||| || || | | | || | ||| || Sbjct 5448 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGAC 5507 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || ||||| |||||||| Sbjct 5508 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380640552240186