Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq54459 104 2e-16 seq29751 96.9 2e-14 >seq54459 Length=6443 Score = 104 bits (114), Expect = 2e-16 Identities = 223/328 (68%), Gaps = 4/328 (1%) Strand=Plus/Minus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| |||||| || || | | | ||||| || Sbjct 4700 ACTGCATGCGAGCGTGCGAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATT 4641 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 4640 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 4581 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | | | || || || | || | || || || ||| | | || | ||| || Sbjct 4580 CTGAATGCCGACCTGTTCCGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCT 4521 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 || ||||||||||| || ||||||| ||||| || || || || || || | || ||| Sbjct 4520 AAGCTTGACAAATCGCAGATCCATGACATTGTGCTGGTTGGCGGGTCTACTCGTATCCCA 4461 Query 475736 AA-AATAAGAGAAATGCTTTCATCATAT-TTTAATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || | | ||| || ||| | || || | || || || ||| || | || | || | | Sbjct 4460 AAGATTCAGA-AACTGC-TGCAGGATTTCTTCAACGGCAAAGAGCTGAACAAGAGCATCA 4403 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 4402 ATCCTGATGAAGCTGTGGCTTATGGTGC 4375 Score = 102 bits (112), Expect = 5e-16 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 474507 ATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAAT 474566 || || || | ||||| ||| | |||||||| |||| |||||||| | |||||| | Sbjct 5495 ATTCTTTTCTAGATGCAAAACGGTTGATTGGGCGTAGATTTGATGACTCTGTTGTCCAGT 5436 Query 474567 CTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATAT--AGA 474624 |||||||| || |||||||| | ||| | |||| || ||| | |||| | | || Sbjct 5435 CTGATATGAAGCACTGGCCTTTCACTGTGGTGAATGATGCTGGCAGACCAAAAGTCCAGG 5376 Query 474625 AGCAATACACGCAGGTGAAACTAAACAATTTTCACCG-GAACAAATTTCTTCAATGGTTT 474683 | | |||| ||| || || ||| | ||| ||| ||| |||||||||| ||||||| Sbjct 5375 TGGAGTACAA--AGGCGAGAC-AAAGAGTTTCTACCCAGAAGAAATTTCTTCCATGGTTT 5319 Query 474684 TAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGA 474721 || |||||||||| ||| || ||||||||||| Sbjct 5318 TAACCAAAATGAAGGAAATTGCAGAAGCATATCTTGGA 5281 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3444 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3385 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 3384 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3353 >seq29751 Length=8246 Score = 96.9 bits (106), Expect = 2e-14 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| ||||| | |||||| || ||||| |||||||| || || | || Sbjct 274 TTATAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 333 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 |||||||| ||||| ||||||||||| || ||||| ||| ||| ||||| || ||| Sbjct 334 TGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCA 393 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | |||||||| || || || || || || ||||| || || || || Sbjct 394 CTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265434701579336