Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq12338 246 3e-60 seq44843 91.5 2e-13 >seq12338 Length=14826 Score = 246 bits (272), Expect = 3e-60 Identities = 652/990 (66%), Gaps = 7/990 (1%) Strand=Plus/Minus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| | || || |||| ||||| || || || |||||| ||| ||| || | Sbjct 11047 TGTGTCTTAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCTGTGTCAAACT 10988 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 10987 TATTAGCAAAGAAGTGGTG---GTTTCGTAGTATCCAGTTCAGGTCTCCTACCCCAAAAA 10931 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | ||| || || |||| |||||||| | || ||||| | ||||| Sbjct 10930 CACAGACAGAGCGAACGTGAACTCCACTGCATGGCGGGTAGGGTGCACCTTTGGACACGT 10871 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 ||||||| ||||||||||||| ||||||||||| | || | |||||| || || | Sbjct 10870 CACCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCAT 10811 Query 160285 ATTTGTACATCAGGGGAA-CGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || ||| | ||||| || || | || || | ||| | |||||||||| Sbjct 10810 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAACGGTGGCCCAC 10752 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || |||||||| ||||| || | ||| || ||||||| ||| ||| Sbjct 10751 AGGTACTCATCCGGGCTGTAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 10692 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | |||| || | |||| | || ||||| || || ||||| || || Sbjct 10691 CTTTCTAATACGTATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTGCCAGAAAAA 10632 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || ||||| | || | Sbjct 10631 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCCGTGTTCTTTATTTTACCATCA 10572 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | || |||||||| || || | ||||| ||| || || Sbjct 10571 ATAATCTCATGGTGTTTTTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 10512 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || |||| ||||| | Sbjct 10511 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATA 10452 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 ||||| || | || || | ||| |||| ||| ||||| || | || || || Sbjct 10451 GGAAAATCCATGCCACAGAGGTTAATCAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGA 10392 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 10391 TCTTTCATGCAGTTAATGTCTGCCTGCACCCTGCTCCATGAAGCATATACAACACTCTCT 10332 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | || | | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 10331 AACTGGCTAGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 10273 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | |||||||| || ||||| Sbjct 10272 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGAT 10213 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 10212 AGATCTTAGAAGTCTATCAAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 10153 Query 160943 CGGAAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAA 161002 ||||| || | || || || || | | | | ||| || | |||||| |||| Sbjct 10152 TGGAAATTCTGCTTCTTCATTGCTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTAAA 10093 Query 161003 ATAATCACAATCCCGCGTCATGTTGATATA 161032 | |||| || |||||||| ||||| Sbjct 10092 GGAGGCACAGTCTGCTGTCATGTTAATATA 10063 >seq44843 Length=947 Score = 91.5 bits (100), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 160838 CTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCT 160897 ||| ||||| || || ||||| || | |||||| || |||||| || ||| || | || Sbjct 586 CTTGCGGTCAACATGGACGCAGTAGATGTTCTGGGGGACGTAGAGGGACCTCAGAAGCCG 645 Query 160898 CTCGAACATCTCTATCTTATGATGGA--TCACGATAGAGTAGGCTATCGGAAACTCGGTC 160955 |||||||||||| || || | ||||| | || || |||||||| || || ||||| | | Sbjct 646 CTCGAACATCTCGATTTTGTCATGGATGTGACCATGGAGTAGGCGATGGGGAACTCTGCC 705 Query 160956 TCCTCGCGACTCAG 160969 ||||| | ||||| Sbjct 706 TCCTCCTGGCTCAG 719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576757554514320