Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq54459 114 1e-19 seq5825 96.9 3e-14 >seq54459 Length=6443 Score = 114 bits (126), Expect = 1e-19 Identities = 362/554 (65%), Gaps = 18/554 (3%) Strand=Plus/Plus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| || ||||| Sbjct 4375 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCGTTGAAG 4434 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || ||||||| || || ||||| | ||||| Sbjct 4435 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCGCCAACCAGCACAAT 4493 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAG 281955 ||||| | ||| ||||| || || || | |||| | | ||||| || || || || Sbjct 4494 GTCATGGATCTGCGATTTGTCAAGCTTAGCATCCCGCAGGGCCTTTTCCACAGGATCCAG 4553 Query 281956 ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GTGAC 282012 | | |||| ||| | | || ||||| || |||||| |||| || ||| Sbjct 4554 GGTGCCACGGAACAGGTCGGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG-- 4611 Query 282013 ATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAG 282071 || || ||||| || || | | |||||||| |||||| | | || || ||||| Sbjct 4612 --TAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAG 4669 Query 282072 ATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTTGCT 282127 | || | ||| || ||||| || ||||| || | || | || | | ||| | || Sbjct 4670 ACAGAGTACGCTTCGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCT 4729 Query 282128 GATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGA 282187 |||| ||| | || | || | |||||| || | | | | || | Sbjct 4730 CGCTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATG 4785 Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || ||||| ||||| || ||||| | ||| | |||| || | | | || | || Sbjct 4786 CGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAG 4845 Query 282248 AGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATA 282307 | |||||||||| || || || | |||||| ||| ||||| || | ||||| ||| Sbjct 4846 ATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATA 4905 Query 282308 AGTACATTCATTTC 282321 || |||||| |||| Sbjct 4906 AGAACATTCCTTTC 4919 >seq5825 Length=48216 Score = 96.9 bits (106), Expect = 3e-14 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 131176 TGTAGTAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTAT 131235 ||| || || ||| | ||||| || ||||| || |||||| | ||| | | | ||||| Sbjct 25607 TGTTGTGGCTACAGTGGCATTCGGAATGGGCATCAATAAAGCAGATATCCGGATGGTTAT 25666 Query 131236 TCATTACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCG 131295 ||||||||| || || ||| | || ||| ||||||||||||||||| ||||| ||||| Sbjct 25667 TCATTACGGTGCCCCTAAGGAAATGGAATCCTATTATCAAGAAATTGGGAGAGCTGGTCG 25726 Query 131296 TGATGG 131301 ||||| Sbjct 25727 CGATGG 25732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737489154187932