Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_024450.1 Length=204054 Score E Sequences producing significant alignments: (Bits) Value seq55616 105 9e-18 >seq55616 Length=10312 Score = 105 bits (116), Expect = 9e-18 Identities = 71/78 (91%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 11725 CCCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTC 11783 |||| ||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||| Sbjct 9757 CCCACTCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGACCGGGGTTC 9698 Query 11784 GATTCCCCGACGAGGAGG 11801 |||||||||||| ||||| Sbjct 9697 GATTCCCCGACGGGGAGG 9680 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717 ||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||| Sbjct 9752 TCCTCGTTAGTATAGTGGTGAGTATACCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 9693 Query 8718 CCCGACGAGGAGCAG 8732 ||||||| |||| || Sbjct 9692 CCCGACGGGGAGGAG 9678 Score = 89.7 bits (98), Expect = 7e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412 |||| ||||||||| |||||||||||||||||| | |||| |||| ||| | ||||||| Sbjct 9681 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGTATACTCACCACTA 9740 Query 139413 TACTAACGAGGA 139424 |||||||||||| Sbjct 9741 TACTAACGAGGA 9752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 652322671050080