Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq12338 136 5e-27 >seq12338 Length=14826 Score = 136 bits (150), Expect = 5e-27 Identities = 577/904 (64%), Gaps = 22/904 (2%) Strand=Plus/Minus Query 162159 TATCCAATTAAGATCCCCCGATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCA 162218 |||||| || || || || || || || || || || || ||||| || || ||||| Sbjct 10959 TATCCAGTTCAGGTCTCCTACCCCAAAAACACAGACAGAGCGAACGTGAACTCCACTGCA 10900 Query 162219 CGGCGGATACAGGGCCCCATCGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCT 162278 ||||| || | || || | | ||| || || || |||| |||||||| || ||||| Sbjct 10899 TGGCGGGTAGGGTGCACCTTTGGACACGTCACCTTCAAAGTACTGCCACTTGACAAACCT 10840 Query 162279 AGTGATAGCCTGCATGTCGGAGGTGTCGTACTTGTACACT-GACGGCACGGCTCCAGGAA 162337 | | || | |||||| || || ||||||| |||| || | || || || || | Sbjct 10839 GGCCAGTGCATTCATGTCAGAAACATCATACTTGT-CACTAGAAGAAACTGCACCTGGGA 10781 Query 162338 CACCCGGCAGTCTCTGTAGAGTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCG 162397 | | || | |||||| | || |||||||||| || || || || || || || || | Sbjct 10780 CTTCAGGGATTCTCTGAACGGTGGCCCACAGGTACTCATCCGGGCTGTAAGTGTCTTTTG 10721 Query 162398 ACCACTCCATGAACTCCCTGACCGTTTTATCG---TATAGAATGTAAGAGACGTAGGACC 162454 |||||| ||||||| | | |||| | | || | ||| || | | Sbjct 10720 CCCACTCAATGAACT---TAAGTATTTTGCTGCTTTCTAATACGTATTCTACAAATCTTC 10664 Query 162455 TGGTCACAATAAAGTACGCGCTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTT 162514 || | || | ||| || || || |||||||| | || | | | ||| || | | || Sbjct 10663 TGCTAACTACAAAATAGGCACTGCCAGAAAAAATTGGAGTACTGAGAGGTGGTAGTTGTT 10604 Query 162515 TGTCTTGACCCGTGTTGACTACCATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGG 162574 ||||| |||||||| || | || || | | | | || || ||||||| Sbjct 10603 TGTCTATGCCCGTGTTCTTTATTTTACCATCAATAATCTCATGGTGTTTTTTCCACCTTA 10544 Query 162575 CCATCTTACTGGTAGACGGG----TGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCC 162630 | ||| || || || | ||| || || | ||||| ||| | ||| Sbjct 10543 CTTCTTTA----TAAACAGGCATTTTTTCTGTTTCCAAGCTGTTTTCACCTTTAAGGGCT 10488 Query 162631 TTCAGCTGACGCACCATCTCTAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTA 162690 || | | || || || | |||||||| | ||||| || |||| ||||| ||| Sbjct 10487 TTTAATTTCTCTACTATTTCCTGGTTGGTCTTTATAGGAAAATCCATGCCACAGAGGTTA 10428 Query 162691 ATAACATATTTCCACTTAACGCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCC 162750 || | |||||||| || || || ||| ||||| | | ||||| | || ||| Sbjct 10427 ATCAGGTATTTCCAGTTTGAACTTCTTCTGTAGAGATCTTTCATGCAGTTAATGTCTGCC 10368 Query 162751 TGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTG 162810 || || | ||||| || || || || || ||||| ||| | | | ||||||||| Sbjct 10367 TGCACCCTGCTCCATGAAGCATATACAACACTCTCTAACTGGCTAGAAATAAAGACATTA 10308 Query 162811 TCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAACA---TCGGGTCCGCTTTCCTA 162867 || ||||| || ||||| ||| |||| || || | || | || || ||| | Sbjct 10307 TCAAAACATGAGACTATTCCCTTCACAGC-AGCAAAAAAAGATTCTGGAGACTTTT--TG 10251 Query 162868 TCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAAC 162927 || || || | |||||| | |||||||||||| ||||| | || || | ||| || | | Sbjct 10250 TCAACATGAATGCAGTAAAAATTCTGAGGGGCATAGATAGATCTTAGAAGTCTATCAAGC 10191 Query 162928 ATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGA 162987 ||||| || || || | ||||| || || || || || || || || || || || Sbjct 10190 ATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAATTGGAAATTCTGCTTCTTCATTG 10131 Query 162988 CTGAGAGACCCTGTAAAGTACTTGCGGTCCCTCACAAACGCCGCACAGTCCTCCGTCATG 163047 ||||||| | ||| ||| || | | | ||| | |||||||| | |||||| Sbjct 10130 CTGAGAGGTTCCATAATGTATTTCCTAGTCTTGGTAAAGGAGGCACAGTCTGCTGTCATG 10071 Query 163048 TTAA 163051 |||| Sbjct 10070 TTAA 10067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577969384547200