Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13082 109 4e-19 seq1803 104 2e-17 >seq13082 Length=16488 Score = 109 bits (120), Expect = 4e-19 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||| ||| |||| || || ||||| ||||| || || |||||||| |||||| Sbjct 15785 CAAGAAGTACAAAGCACAGAGGCTCGTTGTTTCTATGGCTTCCAGATTGCCATGGAAAAT 15726 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||||||||||||||||||||| || || || ||||| |||||| Sbjct 15725 ATACATTCGGAAATGTACAGTCTTCTTATTGACACCTACATTAAAGAT 15678 >seq1803 Length=26599 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 41047 TGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGT 41106 ||||||| || || || || ||| | || ||||| || ||| ||||||||||||| Sbjct 5255 TGATGGCTTTACCTCCATGCCATGCCCTTTGCCAGTTCTATGTTCTAAATGGTGAACTGT 5314 Query 41107 CATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGA 41166 | || ||| | ||||| || || || || ||||||||||| || || || || || || | Sbjct 5315 CTTGCCAACTTTATCAGAGGTCGGGAGATATGGGACTAGGAGTGCCTTTCAATATTGCCA 5374 Query 41167 GTTATGCTCTGCTCACGTATATGATTGCACACGTTAC 41203 | ||| | |||||||| || |||||||| || || || Sbjct 5375 GCTATTCACTGCTCACATACATGATTGCCCATGTCAC 5411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397146071511910