Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq514 91.5 1e-13 seq29751 86.0 5e-12 >seq514 Length=5730 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077 || || || | ||| |||| || | || | || || || || || || |||||||| Sbjct 4877 TTACCACCCCTCAAGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCA 4936 Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137 || | ||||| | ||||| ||||| || || || | || || | ||| ||||| || Sbjct 4937 GACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGG 4996 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | || || || || ||||||| || | | | || | ||||| ||| ||| Sbjct 4997 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCA 5056 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || | ||||| ||||| || ||||||||||| ||||| Sbjct 5057 ACTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 5106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | ||||| | ||||| ||||| || || Sbjct 5359 GTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCA 5418 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| ||||| || || | ||||| || || ||||||| || Sbjct 5419 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 5478 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| | ||||| ||| || || || || || || | ||||| |||| || Sbjct 5479 ACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 5538 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 5539 TTCACAAAGATCTGCAT 5555 >seq29751 Length=8246 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| || ||||| | ||||| ||||| || || Sbjct 28 GTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 87 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| ||||| || || | || || || || |||||| ||| Sbjct 88 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTCGCCTTC 147 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| ||| ||||| || || || || | ||||| ||||| || Sbjct 148 ACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 207 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 208 TTCACAAAGATCTGCAT 224 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/202 (69%), Gaps = 1/202 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || || ||||| || ||||| | ||||| ||||| || || Sbjct 256 GTGGATTCCTTCTGGATGTTATAGTCAGACAGAGTGCGCCCATCTTCCAGCTGCTTGCCA 315 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | ||| ||||| || || | || || || || ||||||| |||| Sbjct 316 GCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTC 375 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| ||| ||||| || || || || | ||||| ||||| || Sbjct 376 ACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 435 Query 27231 TTCACAAAGATTTGCATAGCTG 27252 ||||||||||| ||||| |||| Sbjct 436 TTCACAAAGATCTGCAT-GCTG 456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424603044387984