Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq54459 199 1e-45 seq29751 152 2e-31 seq514 138 3e-27 seq50922 102 2e-16 seq13082 89.7 2e-12 >seq54459 Length=6443 Score = 199 bits (220), Expect = 1e-45 Identities = 378/549 (69%), Gaps = 8/549 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 |||| ||| ||||||| ||||| | || ||||| || |||||||| ||| | || || Sbjct 4919 GAAAGGAATGTTCTTATCTTTGACCTTGGAGGTGGCACCTTTGATGTGTCAATTCTGACT 4860 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 ||||||| || || ||||| || ||| | ||||| ||||| || || | ||||||||| Sbjct 4859 ATTGAAGATGGCATCTTTGAGGTGAAATCCACTGCAGGTGACACTCACTTGGGTGGAGAA 4800 Query 349880 GATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC-TAAAAT 349938 || ||||| || || | || || || | ||||| ||||| ||||| || | Sbjct 4799 GACTTTGACAACCGCATGGTCAACCACTTCATCGCTGAATTCAAGCG-CAAGCACAAGAA 4741 Query 349939 TGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAGAACTGCGTGTGAACGTGCTAA 349998 || || | || || |||||| | |||||||| | ||||| || || ||||| || Sbjct 4740 AGACATCAGCGAGAACAAGAGAGCAGTTCGTCGCCTCCGCACTGCATGCGAGCGTGCGAA 4681 Query 349999 GCGTTCCTTATCATCTACTACCCAAACCTCTATTGAAATTGATTCTCTTGCTGATGGCAA 350058 |||| | | || |||| || || || |||||||||||||||||| ||| || | Sbjct 4680 GCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATTGATTCTCTCTATGAGGGTAT 4621 Query 350059 AGATTTCTTTTCATCTATTACACGTGCTCGGTTTGAAGAATTATGTATG--GATCTTTTT 350116 || |||| |||| ||||| | ||||| |||||||| || ||| || || || Sbjct 4620 TGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGA--GCTGAATGCCGACCTGTTC 4563 Query 350117 AGAGCAACAATGGATCCTGTGGAAAAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAG 350176 | | || |||||||||||||||| | | ||||| || | |||| ||| Sbjct 4562 CGTGGCACCCTGGATCCTGTGGAAAAGGCCCTGCGGGATGCTAAGCTTGACAAATCGCAG 4503 Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 || |||| | || | ||||| || ||||| ||||| ||||| |||| | | || Sbjct 4502 ATCCATGACATTGTGCTGGTTGGCGGGTCTACTCGTATCCCAAAGATTCAGAAACTGCTG 4443 Query 350237 TCTGAGTTTTTTAATGGCAAAGAAC-CTTCTAGATCAATTAATCCAGATGAAGCTGTTGC 350295 || || || || |||||||| | | ||| | || ||||| ||||||||||| || Sbjct 4442 CAGGATTTCTTCAACGGCAAAGAGCTGAACAAGAGC-ATCAATCCTGATGAAGCTGTGGC 4384 Query 350296 ATATGGTGC 350304 |||||||| Sbjct 4383 TTATGGTGC 4375 Score = 118 bits (130), Expect = 3e-21 Identities = 348/531 (66%), Gaps = 4/531 (1%) Strand=Plus/Plus Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAAT-TCTTTGCCATTA 183320 |||||||||| || ||||||||||| || || || | | | | | |||||||| || Sbjct 4373 CTGCACCATAAGCCACAGCTTCATCAGGATTGAT-GCTCTTGTTCAGCTCTTTGCCGTTG 4431 Query 183321 AA-AAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATAC 183379 || |||| ||| | ||| || ||||| ||||| || | ||| || || || || | || Sbjct 4432 AAGAAATCCTGCA-GCAGTTTCTGAATCTTTGGGATACGAGTAGACCCGCCAACCAGCAC 4490 Query 183380 TACTTCATCGATATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439 | |||| ||| | ||| || | | ||| | | ||||| ||||| || Sbjct 4491 AATGTCATGGATCTGCGATTTGTCAAGCTTAGCATCCCGCAGGGCCTTTTCCACAGGATC 4550 Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499 || || | || | || | | |||||| || | ||||| || | |||| Sbjct 4551 CAGGGTGCCACGGAACAGGTCGGCATTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGT 4610 Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAATCGATGTTTGTGTAGATGATGA 183559 | ||||||||||| | ||| | |||||||||||||| | || || || || Sbjct 4611 GTAGAAGTCAATACCCTCATAGAGAGAATCAATTTCAATACTGGCCTGCGTGCTAGAAGA 4670 Query 183560 TAATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATC 183619 | || | || || || || ||||| || | || ||||| | || ||| || || Sbjct 4671 CAGAGTACGCTTCGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTC 4730 Query 183620 TGTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGT 183679 | || |||| || || || | || ||||||| || || || | | | | | Sbjct 4731 GCTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGGTT 4790 Query 183680 ATCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCC 183739 ||||| ||||| ||||| || || || || || ||||| | ||| || ||||| || || Sbjct 4791 GTCAAAGTCTTCTCCACCCAAGTGAGTGTCACCTGCAGTGGATTTCACCTCAAAGATGCC 4850 Query 183740 GTCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 ||||||||| | | |||||| |||||||| || ||||| || | ||||| Sbjct 4851 ATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAA 4901 Score = 107 bits (118), Expect = 6e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 349598 ACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCA 349657 || || ||| ||||||| | ||||| ||||||||||| ||||| | |||||| || Sbjct 5179 ACTGTTACTAATGCTGTAGTGACTGTGCCAGCCTATTTCAATGACTCTCAGCGTCAGGCT 5120 Query 349658 ACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACT 349717 ||||||||||| || | |||||| ||| | ||||| || |||| || ||||| || || Sbjct 5119 ACAAAAGATGCCGGAACCATTGCAGGGCTCAATGTACTGCGAATCATCAATGAGCCGACA 5060 Query 349718 GCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||||| || || || ||||| || || || Sbjct 5059 GCTGCTGCGATAGCCTATGGTCTCGACAA 5031 Score = 89.7 bits (98), Expect = 2e-12 Identities = 116/157 (74%), Gaps = 5/157 (3%) Strand=Plus/Minus Query 349433 CAATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATT 349492 || |||||| | || || | ||||| ||||| || || || | || | ||||| Sbjct 5439 CAGTCTGATATGAAGCACTGGCCTTTCACTGTGGTG---AATGATGCTGGCAGACCAAAA 5383 Query 349493 ATTGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCC-GAAGAAATTTCATCAAT 349551 | |||| || || ||||| || | ||| | ||| ||||| ||||||||||| || || Sbjct 5382 GTCCAGGTGGAGTACAAAGGCGAG-ACAAAGAGTTTCTACCCAGAAGAAATTTCTTCCAT 5324 Query 349552 GGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||| ||||||||||||||||| ||||||||| Sbjct 5323 GGTTTTAACCAAAATGAAGGAAATTGCAGAAGCATAT 5287 >seq29751 Length=8246 Score = 152 bits (168), Expect = 2e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || || || || || || ||||| ||||| | || ||||||||| Sbjct 241 AGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGAGTGCGCCCATCT 300 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||||||||| ||||| ||||| || ||| Sbjct 301 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 360 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || ||||| ||||| ||||| | ||| || ||||| ||||| || | ||| Sbjct 361 TGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 420 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 421 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 452 Score = 134 bits (148), Expect = 4e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || || || || ||||| || || ||||| | || ||||||||| Sbjct 13 AGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCATCT 72 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | |||||||| || ||||| ||||| || ||| Sbjct 73 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 132 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || ||||| | || || ||||| ||||| || | ||| Sbjct 133 TGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTC 192 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || || || || ||||| |||||||| Sbjct 193 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 224 >seq514 Length=5730 Score = 138 bits (152), Expect = 3e-27 Identities = 168/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 140509 TACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAG 140568 ||||||| | || | || ||||| || || || || || || || || || || |||| Sbjct 4878 TACCACCCCTCAAGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAG 4937 Query 140569 ATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAG 140628 | | || ||||||||||| || || || ||||||||||| || | ||||||||||| | Sbjct 4938 ACAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGG 4997 Query 140629 GAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAA 140688 |||| ||||| || ||||| || || || || || || || || | ||| || |||| Sbjct 4998 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAA 5057 Query 140689 CTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 |||| || || | ||||| || || || || || ||||| |||||||| Sbjct 5058 CTTCCAGGGTGATGGTCTTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 5106 Score = 114 bits (126), Expect = 4e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || ||||| || || || || || || || || || || ||||| | || ||||||||| Sbjct 5344 AGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 5403 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || ||||||||||| || | ||||||||||| ||||| || || || ||| Sbjct 5404 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 5463 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 || || || || || || || || || | || || || || || || || | ||| Sbjct 5464 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 5523 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || | || || ||||| ||||||||| Sbjct 5524 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATT 5556 Score = 91.5 bits (100), Expect = 4e-13 Identities = 106/142 (75%), Gaps = 1/142 (1%) Strand=Plus/Plus Query 140530 CAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAA 140589 |||| || ||||| || || || || || || || ||||| | || ||||||||||| | Sbjct 5128 CAAG-TGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCA 5186 Query 140590 GTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAA 140649 | || || || |||||||| || | ||||||||||| ||||| || || || ||||| | Sbjct 5187 GCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCCTGGA 5246 Query 140650 TTTTAGCTTTTACATTATCAAT 140671 | || || || || || || || Sbjct 5247 TCTTGGCCTTGACGTTTTCGAT 5268 >seq50922 Length=6482 Score = 102 bits (112), Expect = 2e-16 Identities = 86/106 (81%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||||||| ||||||| |||||||| || |||||||| |||||| || || ||||||| Sbjct 5487 ATGCTGTTGTTACTGTGCCAGCCTACTTCAATGATGCTCAGCGTCAGGCTACGAAAGATG 5428 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||| | |||||| ||||| ||||| | ||||| || ||||| || Sbjct 5427 CTGGTACCATTGCTGGGTTGAATGTGATGAGAATTATCAATGAGCC 5382 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 |||||||| | ||| | |||||||| ||||| || || || || | || || || | Sbjct 4533 ATTGATGAGATTGTTCTTGTTGGTGGCTCTACTCGCATCCCCAAGATACAGCAACTAGTT 4474 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || ||||| ||||| |||||| | |||||||||||||| ||||| || Sbjct 4473 AAGGAGTTCTTCAATGGGAAAGAGCCTTCTCGTGGCATTAATCCAGATGAGGCTGTGGCC 4414 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||| ||||| ||||| Sbjct 4413 TATGGTGCGGCTGTCCAGGC 4394 Score = 86.0 bits (94), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 349715 ACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTT 349774 || ||||| || ||||| ||||| || || || ||| || || || || || ||| Sbjct 5301 ACCGCTGCTGCCATTGCCTATGGCCTGGACAA---GAGAGAGGGTGAGAAGAACATCCTT 5245 Query 349775 ATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATT 349834 | ||||| || || ||||| ||||||||||| || || || || |||| | ||| | Sbjct 5244 GTGTTTGACTTGGGCGGTGGAACTTTTGATGTCTCCCTCCTCACCATTGACAATGGAGTC 5185 Query 349835 TTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGA 349887 ||||||||| || ||| ||||| || || || || || ||||| ||||| Sbjct 5184 TTTGAAGTTGTGGCTACTAACGGTGACACTCACCTGGGCGGCGAAGACTTTGA 5132 >seq13082 Length=16488 Score = 89.7 bits (98), Expect = 2e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 223719 ATGCCTCATCTCTTGATATTAATTCATTTGAAAATGTTAATCCAGGCATTAAACCTCTCT 223778 || |||||||||| |||| ||| || ||||| || | |||||||||||| ||||| | Sbjct 13536 ATACCTCATCTCTACTGATTAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTT 13595 Query 223779 TTTTCATCCAAAATATTGCGCAAAAAGCTCCTGaaaaaaaTATACCTTCTACACAAGCAA 223838 | |||| |||||| |||| ||||| || ||||| || || ||||| || |||| Sbjct 13596 TCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAA 13655 Query 223839 ACGCTACTA 223847 | ||||||| Sbjct 13656 AAGCTACTA 13664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514012240847546