Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1803 122 7e-23 seq51994 87.8 1e-12 >seq1803 Length=26599 Score = 122 bits (134), Expect = 7e-23 Identities = 140/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| |||||||| || |||||||||||||| || || || ||||||| || Sbjct 1963 CATATCTTTGTATTCTGCTCCAAAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATC 1904 Query 30283 TCCCTCTTCCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30341 |||||| || || ||||| ||| ||| ||| |||| || || | || || || || | Sbjct 1903 TCCCTCCTCTCTGGTGCT-GAAACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCAT 1845 Query 30342 CCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 30401 |||| ||||| || ||||| ||||||| ||||||| ||||| || || || ||||| | Sbjct 1844 CCCAAATCTTCACACCCTTTGCAGAGAGTTCTTTGGCATTTGTAGAACC-CT-ACGAAAC 1787 Query 30402 ACA 30404 ||| Sbjct 1786 ACA 1784 Score = 107 bits (118), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 ||||| ||||| || || |||||||| ||||| || || |||||||| || || || || Sbjct 5417 AGCCCTGTGACATGGGCAATCATGTATGTGAGCAGTGAATAGCTGGCAATATTGAAAGGC 5358 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||| || ||||||||||| || || || || || || || || | Sbjct 5357 ACTCCTAGTCCCATATCTCCCGACCTCTGATAAAGTTGGCAAGACAGTTCACCATTTAGA 5298 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| | |||||| || Sbjct 5297 ACATAGAACTGGCAAAGGGCATGGCATGGAGGTAAAGCCATCAG 5254 >seq51994 Length=31206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || |||||||||||||| |||| || || |||||| | | || | |||||| || || Sbjct 3129 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAGGGACGATTCTTCTCAGGA 3070 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||| || ||| |||||||||||| | ||||| || ||| Sbjct 3069 ATGGAGAACCAGGTTTTTTTACCCATTATCAGAGCATTCTGTTTACCT 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405993567022344