Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq514 93.3 3e-14 >seq514 Length=5730 Score = 93.3 bits (102), Expect = 3e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||| || |||| |||||| || |||||| ||||| || ||||| || || || Sbjct 5107 GCCACCTCTGAGGCGCAGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGA 5166 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || ||||||||||| || | | ||| || || || || Sbjct 5167 CAGGGTGCGCCCATCTTCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGG 5226 Query 34599 CACTCCCTCCTTGTCTGTGATCTT 34622 | ||||||||||| |||||| Sbjct 5227 AATGCCCTCCTTGTCCTGGATCTT 5250 Score = 91.5 bits (100), Expect = 9e-14 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || || |||| ||| | || || ||| ||||| || ||||| || || || Sbjct 5328 GCCGCCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 5387 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || ||| | ||||| || || || || ||||| || | | ||| || || || || Sbjct 5388 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 5447 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | || ||||| | ||| | Sbjct 5448 AATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGA 5506 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | |||| ||| || || || || || || || |||||||| |||||||| || Sbjct 5507 CCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 5558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314484179955806