Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq29751 176 1e-38 seq514 170 4e-37 >seq29751 Length=8246 Score = 176 bits (194), Expect = 1e-38 Identities = 166/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || ||||||||||| || | || || | |||||| Sbjct 241 AGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGAGTGCGCCCATCT 300 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 301 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 360 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||| || || ||||||||| | |||||||| || ||||| ||| Sbjct 361 TGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 420 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 421 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 452 Score = 158 bits (174), Expect = 3e-33 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || || ||||| || || | || || | |||||| Sbjct 13 AGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGCCCATCT 72 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || || || |||| |||||||||||| Sbjct 73 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 132 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| || |||||||| | |||||||| || ||||| ||| Sbjct 133 TGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTGATGGTC 192 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 193 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 224 >seq514 Length=5730 Score = 170 bits (188), Expect = 4e-37 Identities = 165/212 (78%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 4895 AGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 4954 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| |||||||||||| Sbjct 4955 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCC 5014 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | ||||| || || ||||| ||| Sbjct 5015 TGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTC 5074 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 5075 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 5106 Score = 167 bits (184), Expect = 5e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||| || ||||| || || |||||||| || || | ||||| | |||||| Sbjct 5344 AGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 5403 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || || ||||| |||| || ||||||||| Sbjct 5404 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 5463 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||||||||||||||| | || ||||| || ||||| ||| Sbjct 5464 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 5523 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || | ||||| ||||| | ||||||||| Sbjct 5524 TTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 5558 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| |||||||| || || |||||||| || || | ||||| | |||||| Sbjct 5123 AGCACCAAGTGTAGAGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 5182 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || || ||||| |||| || ||||||||| Sbjct 5183 TCCAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCCTCCTTGTCC 5242 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||||||||||||||| | || ||||| || ||||| ||| Sbjct 5243 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 5302 Query 211083 TTTCCCGT 211090 || || || Sbjct 5303 TTGCCAGT 5310 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158201762689430