Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq1803 100 2e-16 seq51994 87.8 1e-12 >seq1803 Length=26599 Score = 100 bits (110), Expect = 2e-16 Identities = 122/161 (76%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCT-GTGCTCGAA 30075 || |||||||||||||| || || || ||||||| |||||||| || || ||||| ||| Sbjct 1941 AAGTGCCTCCACTGGAAACCATAAACTGGTCCCAAATCTCCCTCCTCTCTGGTGCT-GAA 1883 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTC 30135 ||| ||| |||| || || | || || || || ||||| ||||| || ||||| | Sbjct 1882 ACCCTGCTTATCCAGGAACTCACGTGATCCATTAGCATCCCAAATCTTCACACCCTTTGC 1823 Query 30136 GGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30176 ||||| ||||||| ||||| || || || ||||| |||| Sbjct 1822 AGAGAGTTCTTTGGCATTTGTAGAACC-CT-ACGAAACACA 1784 >seq51994 Length=31206 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || |||||||||||||| |||| || | |||||| | | || | |||||| || || Sbjct 3129 TTGAGCTCCCTGCTGAGCACTATATTAATTCTGTCTTTTAAGGGACGATTCTTCTCAGGA 3070 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| || ||| |||||||||||| | ||||| |||||| Sbjct 3069 ATGGAGAACCAGGTTTTTTTACCCATTATCAGAGCATTCTGTTTACCT 3022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405846481806052