Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq13082 116 3e-21 seq24567 107 2e-18 >seq13082 Length=16488 Score = 116 bits (128), Expect = 3e-21 Identities = 107/134 (80%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 4562 ATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACC 4621 || || |||| | ||||| || || |||||||||||||| || | ||| |||||||| || Sbjct 13532 ATTCATACCT-CATCTCTACTGATTAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCC 13590 Query 4622 TCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGC 4681 ||| || || |||||||| || | ||||| || ||||||||||| || ||||| || || Sbjct 13591 TCTTTTCTTCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGC 13650 Query 4682 GGCAAACGCTACTA 4695 ||||| ||||||| Sbjct 13651 TGCAAAAGCTACTA 13664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| || ||||| || || || || |||||||| |||||||||||||| || ||| Sbjct 15679 TCTTTAATGTAGGTGTCAATAAGAAGACTGTACATTTCCGAATGTATATTTTCCATGGCA 15738 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||||| || || || || || | ||| ||||| ||| ||||| Sbjct 15739 ATCTGGAAGCCATAGAAACAACGAGCCTCTGTGCTTTGTACTTC 15782 >seq24567 Length=19836 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || || || || | ||| ||||| | || ||||| || Sbjct 10643 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10702 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 |||||||||||||| ||||| || || |||||||| |||||||| || || ||||| || Sbjct 10703 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 10762 Query 4692 AC 4693 || Sbjct 10763 AC 10764 Score = 105 bits (116), Expect = 6e-18 Identities = 102/130 (78%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 4922 AAATCTTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 ||| |||||| || | |||||| ||||| || || ||||||||||||||||| |||| || Sbjct 15356 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 15415 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||||| |||||||| | ||| || | || || || |||||||| || | || || | Sbjct 15416 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 15475 Query 5041 TTAAATCAAC 5050 |||||||| Sbjct 15476 ACAAATCAAC 15485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426716594996006