Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq13082 120 4e-22 seq30096 111 2e-19 seq24567 89.7 7e-13 >seq13082 Length=16488 Score = 120 bits (132), Expect = 4e-22 Identities = 98/119 (82%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||||| |||| |||||||||||| ||||| || ||||||| ||| | ||| || Sbjct 13541 TCATCTCTACTGATTAGTTCGTTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 13600 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 |||||||| |||| || ||||| ||||||||||| || ||||| || || ||||| || Sbjct 13601 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGC 13659 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| |||||||| | ||||||||||| || || ||||| || ||||| || |||||| Sbjct 12240 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 12299 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAT 47944 |||| || || |||||||| || ||||| ||||| |||| || || || Sbjct 12300 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATTCTCTGCTTTGTATAT 12349 >seq30096 Length=29002 Score = 111 bits (122), Expect = 2e-19 Identities = 103/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||| || |||||||| || || ||||| |||||||| ||||||| || |||||| Sbjct 21779 GTGCCTGCGTTGAATAATGTGGGGGAGGCATGGGTAAACCACCTTTCAGACAGAAGATTG 21838 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || ||||| || || || || |||| ||| | ||||||| Sbjct 21839 TACGTTTCAATTGCAGCATCAATGTCATTTTTGTGGATCCCCACCGATACCCTCATCAAC 21898 Query 78519 ATATGCTGAGG 78529 ||||||||||| Sbjct 21899 ATATGCTGAGG 21909 Score = 105 bits (116), Expect = 9e-18 Identities = 115/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 78002 AACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATG 78061 |||||| ||||| ||||||||||| ||||| || |||| || || |||| || || || Sbjct 19515 AACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTG 19574 Query 78062 TTCTTCATTTCCTGTATTCTT-TTTAAGATCGAGAAACTCCATAATATCAGAATGCCATG 78120 ||||| |||||||| ||||| |||||| || |||||||| | || || ||||||||| Sbjct 19575 CTCTTCTTTTCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATG 19633 Query 78121 GTTCTAGATATATTGCCATAACTCCAGGTC 78150 | || || || || || | | | || |||| Sbjct 19634 GCTCCAGGTAGATGGCAAAAGCCCCGGGTC 19663 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||| ||||| || | || || || ||||| || |||||||| || || || | ||| Sbjct 12379 TGAAACTCTCCTGAGAGGACCCTGCGCGTGTAGATGTTACTGGTGTAGGGCTCGATGGAT 12438 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 || || || ||||| || ||||||||||||||||||||||| || | | | | || Sbjct 12439 TCGTTATTGCCCAAGATCTGAGCAGTAGAAGCAGTTGGCATGGGAGAAAGGAGAAGGCTG 12498 Query 77247 TTTCTGAGACCAT 77259 ||||||| ||||| Sbjct 12499 TTTCTGACACCAT 12511 >seq24567 Length=19836 Score = 89.7 bits (98), Expect = 7e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| ||||| | ||| || || || || || || ||||| || || | || || Sbjct 10643 TCATCTCTGCTAATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 10702 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||||||||| || || || || || |||||||| |||||||| || || ||||| || Sbjct 10703 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGC 10761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694113221260480