Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq54462 145 1e-29 >seq54462 Length=24836 Score = 145 bits (160), Expect = 1e-29 Identities = 220/309 (71%), Gaps = 3/309 (1%) Strand=Plus/Plus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || || ||| | |||| || ||| | | || Sbjct 19498 GGAAAGCAGTGAAAGGACAGCCTTTCACATTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 19557 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| || | || ||||| | ||| ||||| ||||| |||||||||||| | |||| Sbjct 19558 TATTGATTATTTCAAAGCCCACTTTTCCACCGAATGTGCTAGGCTTCCAGTACTCAGGGG 19617 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || || ||||| || || | ||| | || Sbjct 19618 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAAAACGGTGCTCCAATCTCCACCATTG 19677 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAA-TCCGGTGTACAGCTCC 8527 | ||||| |||||||| || || |||||||| | |||||| || | |||||||||| Sbjct 19678 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTA-CAAGAAGGCCTGGGTACAGCTCC 19736 Query 8528 ACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT- 8586 | ||| || | |||||| ||||| | ||||| || || || || ||||||||||| Sbjct 19737 ATAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCTCCTGTA 19796 Query 8587 TTTATTAAT 8595 ||||| || Sbjct 19797 ATTATTGAT 19805 Score = 143 bits (158), Expect = 4e-29 Identities = 177/242 (73%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||| || |||||||| ||||| ||| ||| |||||||| || |||||||| Sbjct 21582 ATGAGTCTAGTAGTTTGGAACAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 21641 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| || ||||| || ||||| || || || |||||||| | || || Sbjct 21642 ATGTCACAGACCCGATTATGTTCTCTCAGCCATATTGTAGCATACATCATCAAGCCTGGG 21701 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| ||||| |||| || || |||| | ||| || ||| || | | ||||| Sbjct 21702 ACCAAACCAAACACCTCCTGCCCAACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 21761 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || || | || ||||||||||| || ||||||||| Sbjct 21762 TAGATCATCTCTGCCTGAGTGTCCTTTACTGTTGGTGGATACATTTCTCCATCAATCATC 21821 Query 9484 TG 9485 || Sbjct 21822 TG 21823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716303459857280