Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq514 136 1e-26 >seq514 Length=5730 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || || ||||| || || |||||||| || || || || ||| Sbjct 5103 CAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTGGAAGTTGA--GCCCAGTG 5046 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| ||||| |||||||| ||||| || || || || |||| Sbjct 5045 ACACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCTGATCAGC 4986 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || | || || ||| Sbjct 4985 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACA 4926 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || ||||| || ||||| ||||| Sbjct 4925 TCCAGAAGGAATCCACCCTGCACCTTGT 4898 Score = 123 bits (136), Expect = 6e-23 Identities = 159/217 (73%), Gaps = 7/217 (3%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || ||||| || | || || || || |||||||| ||||| || Sbjct 5558 AAAATGC---AGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTCGA- 5503 Query 177975 AGCTCAG--ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTC 178032 || ||| |||||||||| |||||||| ||||| |||||||| || || || || | Sbjct 5502 -GCCCAGCGACACCATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCC 5444 Query 178033 CGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCG 178092 | || ||||| | || ||||| || || || ||||| |||||||| | || || | | Sbjct 5443 CTGATCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGGCGCACCCTGTCTG 5384 Query 178093 ATTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | || ||| |||| || ||||| || ||||| ||||| Sbjct 5383 ACTACAACATCCAGAAGGAATCCACCCTGCACCTTGT 5347 Score = 113 bits (124), Expect = 1e-19 Identities = 146/200 (73%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAAC 178002 || || || || |||||||| ||||| || || ||| |||||||||| |||||||| Sbjct 5310 ACTGGCAAGACCATCACCCTGGAGGTCGA--GCCCAGCGACACCATCGAAAACGTCAAGG 5253 Query 178003 AAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAA 178062 ||||| |||||||| || || || || || || ||||| | || ||||| ||||| | Sbjct 5252 CCAAGATCCAGGACAAGGAGGGCATTCCCCCTGATCAGCAGAGGCTGATCTTTGCCGGTA 5193 Query 178063 AACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGC 178122 | ||||| |||||||| | || || | || || ||| |||| || ||||| || || | Sbjct 5192 AGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAATCCACTCTAC 5133 Query 178123 ATCTTGTTTTGAGACTCAGA 178142 | | || || | |||||| Sbjct 5132 ACTTGGTGCTGCGCCTCAGA 5113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202744418026508