Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelecanus_20crispus_20[refseq_20GCF_5F000687375.1_202014-05-09] 63,982 sequences; 1,160,924,693 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq514 132 4e-26 seq29751 129 5e-25 >seq514 Length=5730 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 |||||| | || || | ||| || ||||| ||| |||||||| ||||| ||||| || Sbjct 5328 GCCGCCCCTCAGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGA 5387 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||||||||| | || || ||||||||||| || || ||||| | ||| || || | ||| Sbjct 5388 CAGGGTGCGCCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGG 5447 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813 || || |||||||||| || | || || | ||| | | |||||||| | ||| | Sbjct 5448 AATGCCCTCCTTGTCC-TGGATCTTGGCCTTGACGTTTTCGATGGTGTCGCTGGGCTCGA 5506 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||||| || || || || || |||| ||||| || || |||||||| || Sbjct 5507 CCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATTTT 5558 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 41653 CACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTC 41712 ||| || ||||| ||| |||||||| ||||| ||||| || ||||||||| | || || Sbjct 4897 CACAAGGTGCAGGGTGGATTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 4956 Query 41713 GAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 ||||||||||| || || ||||| | ||| || || | ||||| || ||||||||| Sbjct 4957 CAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCCTTGTCCTG 5016 Query 41773 GATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 ||| || ||| | | | ||||| || | ||| || |||| || || || || Sbjct 5017 GATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTT 5076 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || ||||| ||||| || || ||||||||| Sbjct 5077 GCCTGTCAGGGTCTTCACAAAGATCTGCATG 5107 >seq29751 Length=8246 Score = 129 bits (142), Expect = 5e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || ||||| ||| |||||||||||||| ||||| || || |||||| Sbjct 7 AGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGAATGTTGTAGTCAGACAGAGTGCGC 66 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 67 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCC 126 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || ||||| | | |||||||| | ||| ||||| | || Sbjct 127 TTGTCCTGGATCTTCGCCTTCACGTTCTCAATGGTGTCGCTGGGCTCAACCTCAAGGGTG 186 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 187 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 225 Score = 120 bits (132), Expect = 3e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 || || | ||| || ||||| ||| |||||||| ||||||||||| || || |||||| Sbjct 235 AGGCGCAGCACAAGGTGCAGGGTGGATTCCTTCTGGATGTTATAGTCAGACAGAGTGCGC 294 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || ||||| | ||| || || | ||||| || ||| Sbjct 295 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGGGGAATGCCTTCC 354 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 |||||| ||| || |||| | | ||||| || | ||| ||||| | || Sbjct 355 TTGTCCTGGATCTTGGCTTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCAAGGGTG 414 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || || || ||||| ||||| || || ||||||||| Sbjct 415 ATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461934260818400