Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq7985 277 1e-69 seq18406 104 2e-17 >seq7985 Length=643 Score = 277 bits (306), Expect = 1e-69 Identities = 443/632 (70%), Gaps = 8/632 (1%) Strand=Plus/Minus Query 107785 CCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGG 107844 |||| |||||| | ||||| |||||||| || | |||||||||| | ||| | ||| Sbjct 628 CCCCCCAGAACGTCTACTGCGTCCACGTTGACGGCAAGTCCCCAGCCGCCTTCCAGCAGG 569 Query 107845 CGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGG 107904 | || ||||||| ||||||||||||||||||| |||| || ||| || Sbjct 568 CCGTGCAGGCCATCGCAGCCTGCTTCCCCAATGTCTTTGTGGCTAGCCGCCTGGAAAAGG 509 Query 107905 TGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCC 107964 |||| ||||||||||||||| | ||||||||||||| ||||||||| ||| || | | Sbjct 508 TGGTCTATGCCTCCTGGTCCCGGCTGCAAGCTGACCTCAACTGTATGCGGGACCTGTTGC 449 Query 107965 AGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGA 108024 ||||| | ||||||||| ||| | || || || ||||| || || |||||||| |||| Sbjct 448 AGAGCCCTGTGCCATGGCGCTACGTCCTCAACACCTGCGGCACCGATTTCCCCATCAAGA 389 Query 108025 CCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTG 108084 ||||||||||||| |||| ||||| |||||| || |||| |||||| |||||||| | Sbjct 388 CCAATGCCGAGATCGTCCGCGCCCTGAAGATGCTGCAGGGGCGGAACAGCATGGAGTCAG 329 Query 108085 AGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGA---GGTGACAGACA 108141 || || || | ||| || |||||| | |||| | | | || || || Sbjct 328 AGAAGCCCTCAGCCCTCAAGCAAGTGCGCTGGCAGTACCACCACAAAATGGGGA-AGGTC 270 Query 108142 CACTGTACCCTACCAGCAAGA-TGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACA 108200 || ||| |||| ||| ||| | || || || |||| | |||||||||||| Sbjct 269 GTCT---CCCGGACAGCCAGAGAGAAACAGCCGCCACCCCATAACTCTCCCATGTTCACA 213 Query 108201 GGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAA 108260 || || || || | |||| | | || |||||||| || || |||| || ||||| | | Sbjct 212 GGCAACGCATACATCGTGGTCACGCGGGCCTTTGTGCAGCACATCTTTGAGAACCCCACA 153 Query 108261 TCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCC 108320 || | |||| |||| ||| |||||||| ||||| || || ||| |||||||| Sbjct 152 GTGCAGCAGTTCCTTGAGTGGGCCAAGGACACCTACAGCCCTGATGAGCACGTCTGGGCC 93 Query 108321 ACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATC 108380 ||||| | ||| || | |||| ||| | ||||| | ||||| || || Sbjct 92 ACCCTCAACCGTATGCCCGGCGTGCCAGGCGCCATTCCTCCAAATGACAAGTTCCAGCTC 33 Query 108381 TCAGACATGACTGCCATCGCCAGGCTCGTCAA 108412 |||||||||| ||| | || | || ||||| Sbjct 32 TCAGACATGAACGCCCTGCCCCGCCTGGTCAA 1 >seq18406 Length=30580 Score = 104 bits (114), Expect = 2e-17 Identities = 198/288 (69%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 108274 TTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTG 108333 |||| |||| |||||||| |||||||| || || |||| ||||| || ||||| | Sbjct 19982 TTGAGTGGGCAAAAGACACTTATAGCCCAGATGAGTACCTGTGGGCAACAATTCAGAGAA 19923 Query 108334 CTCCGTGGA-TGCCTGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATG 108389 ||| || | | || || | ||| || || || ||||| | | || |||||| Sbjct 19922 -TCCCTGAAGTCCCAGGTGCAGTTTCTTCTAGTGAC---AAGTACGATGTTTCTGACATG 19867 Query 108390 ACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCG 108449 | ||| | |||||| | ||||||||||||||| || || ||||| || || || Sbjct 19866 AATGCACTGGCCAGGTTTGTCAAGTGGCAGTACTTTGAAGGCGATGTGTCCAAAGGTGCA 19807 Query 108450 CCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGAC 108509 || || |||| ||| |||| | ||| | | |||| ||| |||| || ||| Sbjct 19806 CCCTACCCACCATGCAGTGGAGTTCATGTTCGCTCTGTCTGTGTTTTTGGGGTAGGAGAC 19747 Query 108510 CTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 ||| ||||||| || | ||||| ||| |||| || || ||||||||| Sbjct 19746 CTGAACTGGATGCTACGAAACCACCACTTCTTTGCTAATAAGTTTGAC 19699 Score = 84.2 bits (92), Expect = 2e-11 Identities = 227/344 (66%), Gaps = 4/344 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 20571 CCTCTCAGCAATGAAGAAGCAGAATTTCCAATTGCTTACTCAATAGTGGTTTATCACAAA 20512 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | | || | || || || | | |||||||| ||||| | ||||| | Sbjct 20511 ATTGAGATGCTGGATAGACTTCTAAGATCAATCTATGCCCCCCAGAATTTTTACTGCATT 20452 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || | || || Sbjct 20451 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTCTCATGT 20392 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| |||| Sbjct 20391 TTTGATAATGTCTTTATTTCCAGACAGTTAGAGAGTGTTGTATATGCTTCATGGAGCAGA 20332 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 20331 GTGCAGGCAGACATTAACTGCATGAAAGATCT-CTACAGAAGA-AGTTCAAGCTGGAAAT 20274 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAAT 108029 || || | || || || | ||||| || |||||||||||| Sbjct 20273 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAAT 20230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347985329331090