Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq56936 109 4e-19 >seq56936 Length=3908 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 18094 GTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGT 18153 |||| || |||| || | || || | ||| || || ||||| || || |||||||||| Sbjct 1419 GTTA-CCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGT 1361 Query 18154 CGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCA 18213 ||| || || || ||||||| || ||||| ||| |||| || || || ||||| Sbjct 1360 CGGACAGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGG 1301 Query 18214 CGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCT 18273 ||| | ||||||||| || || | |||||| | | ||| ||||||| ||||| Sbjct 1300 GGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCT 1241 Query 18274 CGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || | ||||||| | ||||| ||||| || || ||||| || ||||| Sbjct 1240 CAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1189 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || || | ||| || || || || || || ||||||||||| | || || || |||| Sbjct 944 AGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGACCATCT 885 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| || |||| || || || |||||| || | ||||||||| || Sbjct 884 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 825 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | |||||| | ||| ||||||| ||| || |||| ||||||| | Sbjct 824 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 765 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || ||||| || ||||| Sbjct 764 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 733 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379035235914825