Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq40839 125 9e-24 seq47146 114 2e-20 seq30157 111 2e-19 seq3258 84.2 3e-11 >seq40839 Length=8561 Score = 125 bits (138), Expect = 9e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 9228 TATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATCC 9287 ||||| |||||| || |||||| | | | ||| || ||||||||||||||||| ||| Sbjct 7260 TATTTTTTATTAAATGCTTCCAGTAAACGCAGCAGGTGTAAGAACAGATTGATGATGTCC 7201 Query 9288 AAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGAG 9347 ||||||| |||||| | || | | || |||||||| || | || || || || | Sbjct 7200 AAGTAGAGATTGATTGCAGCCAGTATGTACTCTTCAGGGGATAATTTGTGCATAAGCAAA 7141 Query 9348 TGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAGC 9407 ||||||||||| ||||| ||||| ||||| | ||| || ||| ||||| | |||| | Sbjct 7140 TGCGTGTCATAAATAATAAATCCACAGAACAGAAGAGCTCCAGCAGCAGCAATCACCAAC 7081 Query 9408 TCCACTGTTTCACT 9421 || | ||| ||||| Sbjct 7080 TCTATTGTCTCACT 7067 Score = 116 bits (128), Expect = 5e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 9450 AAAATTAAAATCCACAAAGTAACAAACAATCCTGCTCCAAGTTTACTGAAATCTCTCTTT 9509 |||| |||||| ||| | |||| | |||||||||| ||| ||||| ||||||||| Sbjct 5992 AAAAGAAAAATCATCAATATGACAACATACCCTGCTCCAAATTTGCTGAAGTCTCTCTTT 5933 Query 9510 GATTGTAGAGTATATGCAGTCAGAGCAAGAAACACTGCAGTAGTCAGCATGAAAGCTTGC 9569 || || | |||||||||||||| ||||||| || |||||||| || || || |||||| Sbjct 5932 GACTGCAAGGTATATGCAGTCAGTCCAAGAAATACAGCAGTAGTAAGAATAAAGGCTTGC 5873 Query 9570 ATAACGACATGCACATCATAGAAA 9593 | |||| ||||||||||||| Sbjct 5872 AAGACGATGGACACATCATAGAAA 5849 >seq47146 Length=33513 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 19275 CCTCATCTCTGCTTATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19216 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 19215 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 19156 Query 36300 CAATAAGTCTCTCTCC 36315 ||| | |||||| || Sbjct 19155 CAACCACTCTCTCACC 19140 >seq30157 Length=13407 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 9696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9755 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 9756 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9815 Query 36300 C 36300 | Sbjct 9816 C 9816 >seq3258 Length=22478 Score = 84.2 bits (92), Expect = 3e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| |||| ||| || ||||||||||| | ||| || || || || || || || | | Sbjct 2858 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 2799 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || |||| || || ||||| || |||| || ||||| || |||| Sbjct 2798 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTGGCAGCCGTTTCAGCAGCCAGCGTATCCA 2739 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| ||||| || || ||| | || | || || || || ||||| Sbjct 2738 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 2693 Score = 84.2 bits (92), Expect = 3e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 66060 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGT 66119 ||||| ||||| ||||||||||||||||| || || | || | ||||||| || || Sbjct 8903 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8844 Query 66120 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8843 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8785 Query 66179 TTCCAAGTATATGGC 66193 |||| ||| ||||| Sbjct 8784 CTCCAGGTAGATGGC 8770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 65419 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 65478 |||| || || || ||||||| || ||| || |||||||| || || || || ||||| | Sbjct 12840 CATACGTTTCATACGGTCCTTGCTCCTCGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 12781 Query 65479 AATAAATGGTTTCGAAGATCTTCTTATTTAGATC-TTGTGCTTCCAGGCTATCAAATGGA 65537 |||||||||| || || || || || || | | || || || | || ||||| ||| Sbjct 12780 AATAAATGGTCTCAAAAAT-TTGTTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGA 12722 Query 65538 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 65597 || | | || || || || ||||| | || || |||||||| || || || | ||| Sbjct 12721 TACCTCATCAGGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGG 12662 Query 65598 CTCTTATTAGAGATTTCAGC 65617 | | || ||| |||||| Sbjct 12661 CGTCTGTTGGAGCGTTCAGC 12642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657623349119400