Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq56936 109 5e-19 seq3258 87.8 2e-12 >seq56936 Length=3908 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| || | ||| | || || || || || ||||| || ||| || |||| | Sbjct 1403 CGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCG 1344 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||| || |||||| ||||||| | ||||||||||| || |||||||| ||| Sbjct 1343 TCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTG 1284 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | ||| | ||||| ||||||| ||||| | ||| | Sbjct 1283 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATG 1224 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||||| ||||| || || || || || ||||| Sbjct 1223 GTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1189 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| | |||| || | ||| | || || || || || ||||| ||||| Sbjct 732 GCCACCTCTCAGGCGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 673 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| ||||| ||||| || |||||| ||||||| | ||||||||||| || Sbjct 672 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 613 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 |||||||| ||||| ||| || || | | ||| | ||||| ||||||| || Sbjct 612 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAAC 553 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | ||| | |||||||| ||||| || || || || || ||||| Sbjct 552 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 505 >seq3258 Length=22478 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/125 (77%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 153684 ACTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACT-TTGATTGCTTTT 153742 |||||||| | ||||| |||||||||||| || | | ||| | || |||||||| || Sbjct 10401 ACTATTTCTGTACACAGATTGCTGCATTTGAT-GGTTCCCAAGTTCTGCTGATTGCTCTT 10343 Query 153743 GCGGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTAT 153802 ||||| |||| ||| ||||| |||||||| || ||||| || || | |||| ||| || Sbjct 10342 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGGGTGCCAGTCTCTGTTTGAGATTCAAT 10283 Query 153803 AATAG 153807 |||| Sbjct 10282 GATAG 10278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495649879572000