Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq30157 120 3e-22 seq47146 105 6e-18 >seq30157 Length=13407 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 ||||||||||||| || ||||| || ||||| || | ||| ||||| ||||||| ||| | Sbjct 9696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9755 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | |||||| |||| ||||| || || |||||||| ||||| || ||||| ||||| | Sbjct 9756 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9815 Query 14014 CTATTAATCGTTCTCC 14029 ||| || ||||| || Sbjct 9816 CTACTACGCGTTCCCC 9831 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | |||||| ||||||||||| | || |||||||| || ||||| | Sbjct 12414 TCTCTTTAGAATCTTTAATGTAAGTATCAATAAGAAGACTGTACATTTCTGAATGTATAT 12473 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||| || ||||| || ||||| || || | |||||| | ||||||||| Sbjct 12474 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 12528 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 14125 TCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGT 14184 ||||||||| | | |||||| ||||||||||| | || |||||||| || ||||| | Sbjct 12614 TCTCTTTAGAATCTTTAATGTAAGTATCAATAAGAAGACTGTACATTTCTGAATGTATAT 12673 Query 14185 TTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTTC 14239 ||||||| || ||||| || ||||| || || | |||||| | ||||||||| Sbjct 12674 TTTCCATGGCAATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 12728 >seq47146 Length=33513 Score = 105 bits (116), Expect = 6e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || || || || | ||| ||||||| || | || | Sbjct 19275 CCTCATCTCTGCTTATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19216 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||||||||| |||||||| || || |||||||| || || |||||||||||||| | Sbjct 19215 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 19156 Query 14014 C 14014 | Sbjct 19155 C 19155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479327517069000