Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq3258 98.7 1e-15 seq56936 95.1 1e-14 >seq3258 Length=22478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 157106 ACTATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACT-TTGATTGCTTTT 157164 |||||||| | ||||| |||||||||||| || ||| ||| | || |||||||| || Sbjct 10401 ACTATTTCTGTACACAGATTGCTGCATTTGATGGTTCC-CAAGTTCTGCTGATTGCTCTT 10343 Query 157165 GCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTAT 157224 |||||||||| ||| ||||| | ||||||||| ||||| || || | |||| ||| || Sbjct 10342 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGGGTGCCAGTCTCTGTTTGAGATTCAAT 10283 Query 157225 GAT 157227 ||| Sbjct 10282 GAT 10280 >seq56936 Length=3908 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || |||||||| ||| || |||| |||||| || || || ||| Sbjct 1385 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTGCCA 1326 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||||||||| || |||||||| ||||| || || || Sbjct 1325 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1266 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| |||| || || || | || | |||||||| ||||| || Sbjct 1265 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 1206 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1205 TTCACAAAGATCTGCAT 1189 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| || || ||||||||||| || |||| ||||| || || || ||| Sbjct 701 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 642 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| ||||||| | ||||||||||| || |||||||| ||||| || || || Sbjct 641 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 582 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | ||| | ||||| |||| || || || | || | |||||||| ||||| || Sbjct 581 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 522 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 521 TTCACAAAGATCTGCAT 505 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | |||| || || || | || ||||| || || ||||||||||| Sbjct 504 GCCACCTCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 445 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || |||||| ||||||| | |||||||| ||||| Sbjct 444 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 385 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| |||| || || Sbjct 384 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 325 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || ||||| || ||||| Sbjct 324 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 277 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| | |||| || || || | || ||||| || || ||||||||||| Sbjct 1188 GCCACCTCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 1129 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||| || || || |||||| ||||||| | |||||||| ||||| Sbjct 1128 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 1069 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || || | | || | ||||| |||| || || Sbjct 1068 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 1009 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| |||| || || || || || ||||| Sbjct 1008 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506591138041200