Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq47146 111 1e-19 seq30157 96.9 3e-15 >seq47146 Length=33513 Score = 111 bits (122), Expect = 1e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| ||||| || || || || || || || || ||||| || || | || || Sbjct 19273 TCATCTCTGCTTATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCTTC 19214 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||||||||||||||| ||||||||||| || || ||||||||||| ||||| || Sbjct 19213 AGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGGCA 19154 Query 13295 ATCAACCTTTCACC 13308 | || || ||||| Sbjct 19153 ACCACTCTCTCACC 19140 >seq30157 Length=13407 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 ||||||||||| || || || || ||||| || || || ||||| | |||| ||| || Sbjct 9698 TCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCTTC 9757 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | |||||| || | ||||| || || ||||| || |||||||| ||||||||||| ||| Sbjct 9758 AGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAGCT 9817 Query 13295 A 13295 | Sbjct 9818 A 9818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTT 13478 ||| |||||||| || || ||| || |||||||||||||| ||||||||||| || || | Sbjct 12430 AATGTAAGTATCAAT-AAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCT 12488 Query 13479 GGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||| ||||| ||||| | ||| |||| | || ||||| Sbjct 12489 GGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTC 12528 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/125 (77%), Gaps = 3/125 (2%) Strand=Plus/Plus Query 13420 AATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTT 13478 ||| |||||||| || || ||| || |||||||||||||| ||||||||||| || || | Sbjct 12630 AATGTAAGTATCAAT-AAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGCAATCT 12688 Query 13479 GGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC-GGAGTAAAATCTTTCTGCT 13537 |||| ||||| ||||| | ||| |||| | || ||||| || | || ||| ||| Sbjct 12689 GGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCTTGACTGAACATTTTTTGCA 12748 Query 13538 AAGTT 13542 ||||| Sbjct 12749 AAGTT 12753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430631605242570