Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq56947 165 1e-35 seq23637 109 8e-19 >seq56947 Length=21546 Score = 165 bits (182), Expect = 1e-35 Identities = 222/308 (72%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8679 GGAACGCGGCCAACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCAC 8738 |||| || | || ||||| ||||| |||||| | |||| || ||| | | ||| Sbjct 5123 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5064 Query 8739 TCTTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGG 8798 | |||| ||| |||| ||||| | ||| || ||||||||||| |||||||| | |||| Sbjct 5063 TATTGATTATCTCAAAGCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 5004 Query 8799 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGC 8858 ||||||| | || |||| || ||||| || || ||||| || |||| ||| | || Sbjct 5003 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCCATCTCCACCATTG 4944 Query 8859 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCA 8918 | ||||| |||||||| || || |||||||| || | || || | |||| ||||| Sbjct 4943 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 4884 Query 8919 CAGCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTGT-T 8977 ||| || |||||||| ||||| | ||||| || || ||||| ||||| ||||| Sbjct 4883 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCCCCTGTAA 4824 Query 8978 TTATTAAT 8985 ||||| || Sbjct 4823 TTATTGAT 4816 Score = 134 bits (148), Expect = 2e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9622 ATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGA 9681 ||||||| ||||| || || || || || ||| ||| |||||||| || ||||||| Sbjct 3130 ATGAGTCTGGTGGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3071 Query 9682 ACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGC 9741 | || || || | |||||||||||| ||||| || |||||||||||||| | || || Sbjct 3070 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 3011 Query 9742 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGA 9801 |||| || || |||| || ||||||| | ||| | ||| || | | ||||| Sbjct 3010 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2951 Query 9802 TAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATC 9861 |||||||| | |||| || || |||| || ||||||||||| || ||||| ||| Sbjct 2950 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2891 Query 9862 TG 9863 || Sbjct 2890 TG 2889 >seq23637 Length=1093 Score = 109 bits (120), Expect = 8e-19 Identities = 131/178 (74%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 8763 CTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTCGCCATGAGGC 8822 |||||||||| || ||||| |||||||| | |||||||||||| ||| | | || | Sbjct 497 CTCCGCCGAATGTACTGGGCTTCCAGTACTCTGGGGAGCAGATGGGGTTTCCAAGAAGCC 438 Query 8823 CTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATGGCGTTGGGAC 8882 | || |||||||||||||| || | ||| | ||||| || || || || | ||||| Sbjct 437 CCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGCTTTCTCCAAAAATACCATTGGGCT 378 Query 8883 GGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCTCCGTAAAG 8940 |||| || || | || || || || ||||||| ||| ||||||||||| || || Sbjct 377 GGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCAGAGCATCGATGTCTCCATACAG 320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 707933314640400