Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq56936 111 1e-19 seq3258 98.7 9e-16 >seq56936 Length=3908 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | || |||||||| || |||||||| || Sbjct 960 GCCACCTCTCAGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGA 901 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||||||| |||| | | |||||| |||||||| Sbjct 900 CAGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGATCCGGAGG 841 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || ||| || | Sbjct 840 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCAAC 781 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 780 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 732 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| || || | || || ||||| || ||||||||||| Sbjct 504 GCCACCTCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 445 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | |||||| || ||||| Sbjct 444 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 385 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 384 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 325 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || ||||| |||||||| Sbjct 324 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 277 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| || || | || || ||||| || ||||||||||| Sbjct 1188 GCCACCTCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 1129 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | |||||| || ||||| Sbjct 1128 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGG 1069 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 1068 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAAC 1009 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || || || ||||||||| Sbjct 1008 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || |||||||| | || | || || ||||| || |||||||| ||| | Sbjct 1415 CCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGAC 1356 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||| || ||||||||||| || |||| | | |||||| || || || Sbjct 1355 AGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 1296 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 1295 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACC 1236 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 1235 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1188 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| | || |||||||| | || | || || ||||| || ||||||||||| Sbjct 732 GCCACCTCTCAGGCGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGA 673 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || ||||||||||| || |||| | | |||||| || || || Sbjct 672 CAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGG 613 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||| ||||| ||| || ||||| | || | || || ||| ||| | Sbjct 612 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAAC 553 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || | || || || || ||||||||| Sbjct 552 CTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 504 >seq3258 Length=22478 Score = 98.7 bits (108), Expect = 9e-16 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 145688 CACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCG 145747 |||| |||||| |||||||||||||||| || |||||||| || |||| |||||| | | Sbjct 10389 CACAGATTGCTGCATTTGATGGTTCCCAAGTTCTGCTGATTGCTCTTCCGGTTGCAAGAG 10330 Query 145748 TCCTTGTAGAGCATGTACGGTCCGCCAGTCTC 145779 || ||||| ||||||||||| ||||||||| Sbjct 10329 TCTTTGTACAGCATGTACGGGGTGCCAGTCTC 10298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471618757814400