Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq47146 114 2e-20 seq30157 111 2e-19 seq3258 93.3 5e-14 >seq47146 Length=33513 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | ||| ||||| || || ||||| ||||| ||||| | ||| | Sbjct 19275 CCTCATCTCTGCTTATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19216 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||||||||| | ||||| || || |||||||| || ||||| ||||| ||||||| Sbjct 19215 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 19156 Query 32803 CAATAAGTCTCTCTCC 32818 ||| | |||||| || Sbjct 19155 CAACCACTCTCTCACC 19140 >seq30157 Length=13407 Score = 111 bits (122), Expect = 2e-19 Identities = 97/121 (80%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||||||| || | ||| || ||||| |||||||| ||||||| || | || | Sbjct 9696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9755 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | |||||||| || || ||||| || ||||||||||| |||||||| ||||| ||||| | Sbjct 9756 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9815 Query 32803 C 32803 | Sbjct 9816 C 9816 >seq3258 Length=22478 Score = 93.3 bits (102), Expect = 5e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 |||| |||| ||| || ||||||||||| | ||| || || || || || || || || | Sbjct 2858 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 2799 Query 63870 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 63929 | ||||| || || |||| || || ||||| || |||| || ||||| || |||| Sbjct 2798 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTGGCAGCCGTTTCAGCAGCCAGCGTATCCA 2739 Query 63930 ATTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCAT 63975 ||| ||||| || |||||| | || | || || || || ||||| Sbjct 2738 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCAT 2693 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 63071 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGT 63130 ||||| ||||| ||||||||||||||||| || || | || || ||||||| || || Sbjct 8903 ACTCGCTTCATGAAGAGATCAGGAATCCAGAGGGCAAAGAAAAGGTCTCTGGCTCGCTGC 8844 Query 63131 TCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 || || || || || ||||| |||||| || || ||| | | || || ||||||| || Sbjct 8843 TCTTCTTTCCCAGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCCAAATGCCATGG 8785 Query 63190 TTCCAAGTATATGGC 63204 |||| ||| ||||| Sbjct 8784 CTCCAGGTAGATGGC 8770 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/200 (70%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 62430 CATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGT 62489 |||| || || || ||||||| || ||| || |||||||| || || || || ||||| | Sbjct 12840 CATACGTTTCATACGGTCCTTGCTCCTCGGCAAGTTCACAGCTGGCTTCCAAAGCACCAT 12781 Query 62490 AATAAATGGTTTCGAAGATCTTCTTATTTAGATC-TTGCGCTTCCAGGCTATCAAATGGA 62548 |||||||||| || || || || || || | | || || || | || ||||| ||| Sbjct 12780 AATAAATGGTCTCAAAAAT-TTGTTGGTTCAAGCGCTGGGCCTCGGGACTTTCAAAGGGA 12722 Query 62549 TAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGT 62608 || | | || || || || ||||| | || || |||||||| || || || | ||| Sbjct 12721 TACCTCATCAGGATGAAAGCATCTGCCAGGCCCTGCACACCAATGCCAATGGGACGATGG 12662 Query 62609 CTCTTATTAGAGATTTCAGC 62628 | | || ||| |||||| Sbjct 12661 CGTCTGTTGGAGCGTTCAGC 12642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633103036086000