Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq56936 109 5e-19 >seq56936 Length=3908 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || || ||| |||||| || || || ||| Sbjct 1157 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 1098 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 1097 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1038 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 1037 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 978 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 977 TTCACAAAGATCTGCATG 960 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || || ||| |||||| || || || ||| Sbjct 701 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 642 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 641 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 582 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 581 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 522 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 521 TTCACAAAGATCTGCATG 504 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || || ||| |||||| || || || || Sbjct 929 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGACCATCTTCCAGCTGCTTGCCT 870 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || | ||| || ||||||||||||||||| ||||| ||||| || Sbjct 869 GCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 810 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| ||| || || | ||| | || ||||| ||||| || Sbjct 809 ACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 750 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 749 TTCACAAAGATCTGCATG 732 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || ||||||||||| || || ||| |||||| || || || ||| Sbjct 473 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 414 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || |||||||||||||| ||||| ||||| || Sbjct 413 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 354 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || |||| ||| | || ||||| ||||| || Sbjct 353 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 294 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 293 TTCACGAAGATCTGCAT 277 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || ||||| || || |||||||| ||| || || ||| ||||| || || || ||| Sbjct 1385 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCTTCCAGCTGCTTGCCA 1326 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| || || || ||||||||||| ||||| ||||| || Sbjct 1325 GCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1266 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| |||||| ||| || || |||| ||| | || ||||| |||| || Sbjct 1265 ACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTC 1206 Query 114366 TTTACAAAAATCTGCATG 114383 || ||||| ||||||||| Sbjct 1205 TTCACAAAGATCTGCATG 1188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419792434887420