Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq56936 127 2e-24 seq3258 82.4 8e-11 >seq56936 Length=3908 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | | |||||| | ||||| ||||||||||| Sbjct 473 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 414 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || |||||||| ||||| || || || || || ||| Sbjct 413 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 354 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| |||| || Sbjct 353 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 294 Query 64427 TTTACGAAAATTTGCATTTT 64446 || ||||| || |||||||| Sbjct 293 TTCACGAAGATCTGCATTTT 274 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || ||||||||||| | | |||||| | ||| Sbjct 716 AGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCT 657 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||| ||||| ||||| || || Sbjct 656 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 597 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || || || || | || | |||| Sbjct 596 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 537 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || || ||||| Sbjct 536 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 505 Score = 122 bits (134), Expect = 9e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || ||||| || || |||||||| || | | |||||| ||||| Sbjct 1400 AGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTCT 1341 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| |||||| ||||| ||||| ||||| || || Sbjct 1340 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCC 1281 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || |||| || || || || | || | |||| Sbjct 1280 TGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 1221 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| ||||| || || || || || ||||| Sbjct 1220 TTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1189 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || || ||||||||||| | | |||||| | ||||| ||||||||||| Sbjct 1157 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCA 1098 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || |||| |||||| || |||||||| ||||| || || || || || ||| Sbjct 1097 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTG 1038 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || |||| || || || || | || | ||||||||| |||| || Sbjct 1037 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 978 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 977 TTCACAAAGATCTGCAT 961 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| |||| | |||||| | ||| Sbjct 944 AGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGACCATCT 885 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| || | || |||| |||||| || |||||||| ||||| || || Sbjct 884 TCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCC 825 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || || || | || | |||| Sbjct 824 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTC 765 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||| || || || || || ||||| Sbjct 764 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 733 >seq3258 Length=22478 Score = 82.4 bits (90), Expect = 8e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 154631 CACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTT 154690 ||| ||||||| |||| ||| |||||| ||||| |||| ||| | |||||| || Sbjct 10402 CACTATTTCTGTACACAGATTGCTGCATTTGATGGTTCCCAAGTTCTGCTGATTGCTCTT 10343 Query 154691 GATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAAT 154750 |||||| | ||||||||||| |||||||||||||| || || ||| | |||||| Sbjct 10342 CCGGTTGCAAGAGTCTTTGTACAGCATGTACGGGGTGCCAGTCTCTGTTTGAGATTCAAT 10283 Query 154751 AAT 154753 || Sbjct 10282 GAT 10280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499227690275400