Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq56947 141 1e-28 seq23637 116 5e-21 >seq56947 Length=21546 Score = 141 bits (156), Expect = 1e-28 Identities = 209/296 (71%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 |||| || | || ||||| || ||||| ||| || ||||| ||| | || || | Sbjct 5123 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5064 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || | || || || || || | || || ||||||||||| ||||||||| | |||| Sbjct 5063 TATTGATTATCTCAAAGCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 5004 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 ||||||| | || |||| || ||||||| || ||||| || |||| ||| | || Sbjct 5003 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCCATCTCCACCATTG 4944 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | ||||| ||||||||||| || || || ||||| || | || ||| | || || || | Sbjct 4943 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 4884 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 ||| || | ||| ||||| || |||||| || || || || || || || ||| Sbjct 4883 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCCCCT 4828 Score = 136 bits (150), Expect = 6e-27 Identities = 170/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 9736 GTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAG 9795 |||||||| || | |||||| ||| |||| || || || || ||||| || | || ||| Sbjct 3121 GTGGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGGATGTCACAG 3062 Query 9796 ACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCA 9855 |||| ||||||||| ||||||||||| || ||||||||||| || || || || ||||| Sbjct 3061 ACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGGACCAAACCG 3002 Query 9856 AACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATA 9915 ||||| || | ||| || | ||| ||| | || || | | || | || | ||| Sbjct 3001 AACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGGTAGATCATC 2942 Query 9916 TGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | |||| || || || || || || ||||||||||| || ||||| | ||| Sbjct 2941 TCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATCTG 2889 Score = 93.3 bits (102), Expect = 6e-14 Identities = 132/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 9493 ATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCA 9552 ||||| |||||||| | ||| || | | || |||| | |||| ||| | || Sbjct 4311 ATGGAGTTGTTGTAGAGGAACTGCTGGAAAGTGTACTCCTGGTCGTGTATCTGGAACGTG 4252 Query 9553 TCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGG 9612 |||||||| || | |||||| |||| || |||||||| ||||| || |||||||||||| Sbjct 4251 TCAGGCAAAAGTGGGTGCCAGTGGTACAGAGTATTGAATTCGGCAGCAATTCGGTTCTGG 4192 Query 9613 TACTGAAA--GGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACC 9670 || ||||| | ||| |||||| | ||| || || || | || | ||||||||| | Sbjct 4191 TATTGAAATCGCTGGT--TGAACAGCAGCTCAGGATCGAACTTGAGTTTGAAGTGGTAAC 4134 Query 9671 CGCT 9674 | || Sbjct 4133 CACT 4130 Score = 89.7 bits (98), Expect = 7e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || | ||||| ||||||| ||||||| ||||| ||||| ||| | Sbjct 410 CTTACGTGTTGTACAGTTTTCCCCATAAAATCCCGTCCTTGTACAGTCGCATTCATACTG 351 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||||||| |||| ||| ||||||| |||||||| |||| || ||||||||||| Sbjct 350 ATCAAACCCTGTTGTCACGCACACCCCTCTGTTCTGGCATGGGTTGGAGCAGCAAGGGTT 291 Query 10960 GGCT 10963 |||| Sbjct 290 GGCT 287 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 10389 ACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTATA 10448 |||||| || || | || || ||||||||| | || || || || ||||||| || Sbjct 1241 ACCTTTAACACCCATTGGTGTTGGGCAGTCAAGTCCCACTGGTGGAAGGCTTCTCGTGTA 1182 Query 10449 ATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGCGG 10508 |||||| ||||| ||| | ||||||||||| ||||| | |||||| ||||| || Sbjct 1181 ATAGGAAAGATTGGAATAAGCTTCCCAGCTTTTGTAACTATAATCACTATTGTAAGTTGG 1122 Query 10509 GGGACTGTCAATCA 10522 || |||||||||| Sbjct 1121 TGGGCTGTCAATCA 1108 >seq23637 Length=1093 Score = 116 bits (128), Expect = 5e-21 Identities = 205/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 8880 GGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGG 8939 ||||||| | |||| || |||||||||| || | ||| || | | ||| | Sbjct 581 GGAACGCCACGTACGGGCACTTCTTCACATTGAGGCACACGAGTTTCTTCAGCGATGCTG 522 Query 8940 TTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGG 8999 | || || || || || || | |||||||| || ||||| ||||||||| | |||| Sbjct 521 TCTTAACTATCTCGAAGCCAGTTGCTCCGCCGAATGTACTGGGCTTCCAGTACTCTGGGG 462 Query 9000 AGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGC 9059 |||||||| ||| | | ||||| |||| |||||||||||| || | ||| | |||| Sbjct 461 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 402 Query 9060 TCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGA 9119 | || || || || || ||| | ||||| || | | ||||| || | || | Sbjct 401 TTTCTCCAAAAATACCATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 342 Query 9120 CAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCTACA 9178 ||| |||| ||| ||||| || |||||| ||| || || |||||| ||| ||| || Sbjct 341 GAGCATCGATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTGCA 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723123822819000