Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq56936 145 2e-29 >seq56936 Length=3908 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| |||||||| |||| ||||||||| | || || | ||||| Sbjct 945 CAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGACCATC 886 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || | |||||| |||||| ||| ||||| || Sbjct 885 TTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTC 826 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| | | ||| || || | ||||| || Sbjct 825 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGT 766 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 765 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 736 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| || ||||| |||| |||||| |||| || || | ||||| Sbjct 717 CAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATC 658 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 657 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 598 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || ||| | |||||| | | || || |||| ||||| || Sbjct 597 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 538 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 537 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 508 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| ||||| || ||||| |||| |||||| |||| || || | ||||| Sbjct 1173 CAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATC 1114 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || ||| ||| ||||| || Sbjct 1113 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 1054 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 1053 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 994 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || |||||||| || || Sbjct 993 CTTGCCAGTCAGGGTCTTCACAAAGATCTG 964 Score = 118 bits (130), Expect = 2e-21 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| |||||||| ||||| || ||||| |||| ||||||||| | || || | || || Sbjct 1401 CAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCGTC 1342 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || || ||| ||||| || Sbjct 1341 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTC 1282 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || ||| | |||||| | | || || |||| ||||| || Sbjct 1281 CTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 1222 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | || |||||||| || || Sbjct 1221 CTTGCCAGTCAAGGTCTTCACAAAGATCTG 1192 Score = 114 bits (126), Expect = 3e-20 Identities = 157/219 (72%), Gaps = 3/219 (1%) Strand=Plus/Minus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||| || | ||| ||||| || ||||| |||| |||||| |||| || || | ||||| Sbjct 489 CAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCATC 430 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | |||||| || ||| ||| ||||| || Sbjct 429 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC 370 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | || || |||| ||||| || Sbjct 369 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGT 310 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||| || || || || ||||| || || || |||||| Sbjct 309 CTTGCCAGTCAGGGTCTTCACGAAGATCTG---CATTTT 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177912817049595