Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq56936 140 3e-28 >seq56936 Length=3908 Score = 140 bits (154), Expect = 3e-28 Identities = 170/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||||||||| || ||||| || || || || ||||| ||||||||| | || || ||| | Sbjct 273 AAAAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCC 332 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || |||| | | | | | || | || |||| ||||| || || ||||| | || Sbjct 333 CAGTGACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGA 392 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||| |||| || | || ||||| |||||||| || | |||||||| || || Sbjct 393 TCAGCAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTA 452 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||| |||||| | || ||||| ||||||||||| ||||||| ||| Sbjct 453 CAACATCCAGAAGGAATCCACTCTGCACTTGGTGCTGCGCCTGAGAGGTGGC 504 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| Sbjct 1189 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 1248 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || |||||| |||| || Sbjct 1249 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 1308 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| |||| |||||||| |||||||||| Sbjct 1309 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGACGGTCGCACCCTGTCCGACTACAAC 1368 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| |||||| | || ||||| | |||||||| |||| || || Sbjct 1369 ATCCAGAAGGAATCCACTCTGCACCTTGTGCTGCGCCTGAGGGGTGG 1415 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| ||| Sbjct 505 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 564 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | || | || |||| ||||| || || |||||| |||| || Sbjct 565 GACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCCGATCAG 624 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| || |||||| Sbjct 625 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTACAAC 684 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || ||||| | |||||||| ||||||| ||| Sbjct 685 ATCCAGAAGGAATCCACTCTGCACCTTGTGCTGCGCCTGAGAGGTGGC 732 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || ||| ||| Sbjct 961 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTTGAGCCCAGT 1020 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| || || ||||| | || || Sbjct 1021 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCAGATCAG 1080 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || ||||| |||||||| || | |||||||| || |||||| Sbjct 1081 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCTGATTACAAC 1140 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| |||||| | || ||||| ||||||||||| ||||||| ||| Sbjct 1141 ATCCAGAAGGAATCCACTCTGCACTTGGTGCTGCGCCTGAGAGGTGGC 1188 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| ||||||||| | || || || ||| Sbjct 733 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTTGAACCCAGT 792 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| || || ||||| | || || Sbjct 793 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCTCCGGATCA 851 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | ||| ||||| |||||||| || | |||||||| |||||||| Sbjct 852 GCAGAGGCTGATCTTCGCAGGCAAGCAGCTGGAAGATGGTCGCACCCTGTCAGACTACAA 911 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || ||||| | |||||||| ||||||| ||| Sbjct 912 CATCCAGAAGGAGTCCACTCTGCACCTTGTGCTGCGCCTGAGAGGTGGC 960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499755249494400