Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq54874 280 2e-70 seq895 179 5e-40 >seq54874 Length=50929 Score = 280 bits (310), Expect = 2e-70 Identities = 1038/1608 (65%), Gaps = 54/1608 (3%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || |||| || || || || ||||| ||||| |||||||| || || | Sbjct 2080 TTCATCCTCCGCTTTGTATTTCTCAGCTTCTTGCACCATACGGTCAATGTCATCCTT-GC 2022 Query 6628 TAAT-CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTT 6686 ||| | ||||| ||||| || || || ||||| | ||||||| | ||| || Sbjct 2021 TAAGGCGACCCTTGTCATTGGTGATGGTGATCTTGTTCTCCTTACCCGTGCTCTTGTCCA 1962 Query 6687 CAGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTG 6746 | || || || |||| ||||| || ||||||| || || | || | || || || Sbjct 1961 CGGCGCTGACGTTCAGGATACCGTTGGCATCAATGTCAAAAGTGACCTCGATCTGGGGGA 1902 Query 6747 TACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCG 6806 || | ||||| | || || ||||||| ||||| | || || || |||| ||| Sbjct 1901 CTCCACGGGGTGCTGGGGGGATGCCCGTTAGGTCAAACTTGCCCAGCAAGTTGTTGTCCT 1842 Query 6807 TCGCCTTCTTACGTTCACCTTCATAGACTTTAATT--GTCACCGCAGGTTGATTATCTTG 6864 | | | | | |||||| ||||| || | | | ||| || || || || Sbjct 1841 TTGTCATAGCCCTTTCACCCTCATATACCTGGACCAGGACACTGCTC--TGGTTGTCCGA 1784 Query 6865 TGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGG 6924 || | |||| | || || || | ||||| || || || | | || | | Sbjct 1783 GTAGGTGGTGAAGGTCTGAGTTTGTTTGGTGGGAATGGTGGTGTTGCGCTTGATGAGAGC 1724 Query 6925 GGTCATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAA 6984 |||||| | || || || || | || ||||||| ||| || || |||||||| | Sbjct 1723 GGTCATCACTCCGCCAGCTGTCTCAATGCCCAGAGACAAAGGGGTGACATCCAAGAGCAG 1664 Query 6985 CAGGTCTTGAAC------AGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGT 7038 ||| || || || ||||| || | ||| | | ||| || ||||| || | Sbjct 1663 CAGATCCTGCACGTTCTCAGATTTGT------CTCCCATGAGGATAGCTGCTTGCACAGC 1610 Query 7039 CGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAA 7098 || || || || || |||||||||||||| || | ||||| || ||||| || || || Sbjct 1609 AGCACCATAAGCAACAGCCTCATCGGGGTTGATGCTCTTATTGAGCTCTTTGCCATTGAA 1550 Query 7099 ATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGAT 7158 | ||| || || | ||| || || ||||| || || || ||||| |||| ||||| Sbjct 1549 GAAGTCCTGTAGCAGCTTTTGGATCTTGGGGATACGAGTGGAGCCACCCACCAGCACGAT 1490 Query 7159 TTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCAT 7218 || | | | || || | ||| | || || || | || || || || |||| Sbjct 1489 CTCCTGGATCTGGCCCTTGTCTAGCTTGGCATCACGCAGAGCCTTCTCCACCGGCTCCAG 1430 Query 7219 ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATA 7278 |||||| | || | || |||||||| || ||||| |||||||| || || Sbjct 1429 GGTGCCACGGAAGAGATCAGCATTGAGCTCCTCAAAGCGGGCACGAGTAATGGAAGTGTA 1370 Query 7279 GAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGA--- 7335 ||| |||| ||| ||||| | || || || |||||| | | ||| ||| ||||| Sbjct 1369 GAAGTCAATGCCCTCGTAGAGGGAGTCGATCTCAATGCTAGCTTG---CGTGGAAGAGCT 1313 Query 7336 TAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACC 7395 | || |||||||| | |||||| ||||| || | || | | || ||| ||| || Sbjct 1312 GAGGGTGCGCTTTGCTCTCTCACAAGCCGTACGCAGTCGCCTCACTGCCCGCTTGTTGCC 1253 Query 7396 GGAAATATCTTTCTTATGTTTACGTTTAAACTCTT-CAGAGAAGTGTCGA--AGGAGTCT 7452 | ||| || ||| || ||||| || || |||| || | || || | | | | | Sbjct 1252 AGCAATGTCGCGCTTGTGCTTACGCTTGAATTCTTCCACAAAATGGTTCACCATGCGGTT 1193 Query 7453 CGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGAT 7512 || || || || ||||||| || || || || || || | || || ||||| || Sbjct 1192 ---GTCAAAGTCCTCCCCACCCAGATGGGTGTCACCAGCTGTGGACTTCACCTCAAAAAT 1136 Query 7513 ACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAG 7572 || | |||||| | | | || |||||||| || || || |||| |||||| ||||| Sbjct 1135 GCCATCCTCAATGGTAAGGATGGACACATCAAAAGTGCCCCCTCCCAAGTCAAATATGAG 1076 Query 7573 TACGTTCGTATCGTCGTCTTTG------TTCTTATCGAGACCGTACGCGATAGCCGCCGC 7626 ||| ||| | || | | | ||||| || | || || || ||||| || || Sbjct 1075 TACATTCTTCTCTCCAGCCCGGGTACCTTTCTTGTCCAAGCCATAGGCTATAGCAGCTGC 1016 Query 7627 CGTTGGTTCATTAATAATACG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCG 7685 || || || || |||||||| | ||| || ||||||| || || | |||||||| | Sbjct 1015 TGTGGGCTCGTTGATAATACGCATCACA-TTAAGGCCAGTGATGGTGCCAGCATCTTTGG 957 Query 7686 TCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTT 7745 | || || || || || || || ||||| || || || || | ||| || | | || | Sbjct 956 TGGCCTGGCGCTGGGAGTCATTGAAGTAAGCAGGCACTGTGATGACAGCATTCTGCACCT 897 Query 7746 TCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCT 7805 | || ||||| | || || || || ||||| ||||| || ||||| || |||| Sbjct 896 TGCGCCCCAGATAGGCCTCAGCAATCTCCTTCATCTTGGTGAGGACCATGGAGCTGATCT 837 Query 7806 CTTCAGCCGCAAACTGT-TTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCC 7864 | || | | | | || ||| | ||||| || | || |||| | | | || || Sbjct 836 CCTCTG-GGAAGAAGGTCTTCATCTCACCCTTGTACTCCACTTGCACCTTAGGCTT---- 782 Query 7865 GCAGCACCGGGGATAACCTTA---TACGACCAATCTTTCATATCGTCTTGGACCTGTTGG 7921 || |||| | ||| | ||| ||| | |||||||| || ||| || Sbjct 781 GC--CACCCTCATTCACCACACGGAACGGCCAGTGCTTCATATCAGACTGCACCGTGGGG 724 Query 7922 TCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATG 7981 || | |||| | ||||| |||||||| |||||||| | ||||| | |||||||| Sbjct 723 TCATCATACTTGCGGCCGATGAGACGCTTGGCATCAAAGATGGTGTTGGTAGGGTTCATA 664 Query 7982 GCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACG 8041 || |||||||| || || || ||||| || || || || || || || || || Sbjct 663 GCCACCTGGTTCTTGGCAGCATCGCCGATGAGGCGCTCTGTA---TCAGTGAAGGCCACA 607 Query 8042 TACGATGGG-GTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTG 8100 || | |||| || || || || || ||||| || || || || || || | | | || Sbjct 606 TA-GCTGGGTGTGGTGCGGTTGCCCTGGTCATTGGCGATGATCTCCACTTTGCCATGCTG 548 Query 8101 CCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||| || || || || ||||| || || || || || |||||||| Sbjct 547 GAAGACACCCACACAGGAGTACGTGGTGCCCAAGTCGATGCCGATTGC 500 >seq895 Length=11182 Score = 179 bits (198), Expect = 5e-40 Identities = 370/546 (68%), Gaps = 12/546 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || || || || ||||| || || || | || ||||| ||||| || || || Sbjct 2558 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2499 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 ||||| | || || ||||| || ||||| || || || ||||| |||| || || Sbjct 2498 AAATCCTGCAGCAGTTTCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACAATG 2439 Query 7160 TCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCA-- 7217 |||| | | ||||| |||| || | ||||| || | ||||| ||||| |||| Sbjct 2438 TCATGGATCTGAGATTTGTCGAGTTTAGCATCTCGCAGGGCCTTTTCAACAGGATCCAAG 2379 Query 7218 -TACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 ||| |||||||| ||| ||| || ||||| || || | |||||||||||| Sbjct 2378 GTACC---ACGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGTG 2322 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGAT 7336 ||||| |||| || || || | ||||| |||||||| | | || | | ||||| Sbjct 2321 TAGAAGTCAATACCCTCATAGAGAGAATCTATTTCAATACTGGCCTGCGTGCTAGAAGAC 2262 Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 | || |||||||| ||||| || || || || | ||||||| || | | ||| | Sbjct 2261 AGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGTTCTCA 2202 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GTCGA--AGGAGTCTC 7453 || |||||||| || || || || || || | ||||| || || | | | | Sbjct 2201 CTGATGTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACCATGCGATT- 2143 Query 7454 GAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATA 7513 || || ||||| ||||||||||| || || || || || | || || ||||| || Sbjct 2142 --GTCAAAGTCTTCTCCACCCAAGTGGGTGTCACCTGCAGTGGACTTCACCTCAAATATG 2085 Query 7514 CCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGT 7573 || ||||||| | | | || |||||||| || ||||| || |||||||| || || Sbjct 2084 CCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAGATAAGA 2025 Query 7574 ACGTTC 7579 || ||| Sbjct 2024 ACATTC 2019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634602583199400