Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq895 131 1e-24 seq54874 107 2e-17 >seq895 Length=11182 Score = 131 bits (144), Expect = 1e-24 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| |||| ||| | ||||||||||| ||||| |||||||| || ||||| ||||| Sbjct 1754 GTTACTAATGCTGTAGTGACTGTACCAGCCTATTTCAATGACTCTCAGCGTCAGGCTACA 1813 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||| || || || || || || ||||||||||| || || ||| Sbjct 1814 AAAGATGCTGGAACTATTGCAGGGCTCAACGTACTGCGAATTATCAATGAGCCAACAGCT 1873 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| | || ||||| || || ||| Sbjct 1874 GCTGCCATAGCCTATGGCCTGGACAAA 1900 Score = 100 bits (110), Expect = 2e-15 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 549991 AGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAA 550050 |||| | || || ||| | || ||||| ||| ||||||||||| | ||| |||| || Sbjct 757 AGCTGTCGGAATTGATCTTGGCACCACCTATTCCTGTGTTGGTGTATTCCAACATGGGAA 816 Query 550051 AGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCAC 550110 || ||||| ||||||||||| || |||||| | || || ||| || ||| | ||||| Sbjct 817 GGTGGAAATCATTGCCAATGACCAGGGTAACCGCACCACGCCAAGCTACGTTGCCTTCAC 876 Query 550111 GGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACC 550168 || || || || |||| ||||| ||||| | |||| || || ||||| ||| Sbjct 877 AGATACGGAGAGGTTGATTGGCGATGCTGCAAAGAACCAAGTTGCAATG--AATCCAACC 934 Query 550169 AATACTATTTTTG 550181 ||||| |||||| Sbjct 935 AATACAGTTTTTG 947 Score = 86.0 bits (94), Expect = 5e-11 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||| |||||||| | || ||||| || |||||||| || || ||||| |||||| Sbjct 3490 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3549 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| || |||||||| ||||| ||||| Sbjct 3550 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3581 >seq54874 Length=50929 Score = 107 bits (118), Expect = 2e-17 Identities = 353/546 (65%), Gaps = 11/546 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || || || ||||| || ||||| ||||| | || |||| ||| Sbjct 500 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGTGTGGGTGTCTTCCAGCATGGCAAA 559 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || || |||||||| || || ||| | || || || ||||| | ||||| Sbjct 560 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 619 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || || | | | || ||||| || || | || | || || |||||||| Sbjct 620 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 679 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || || |||||||| || ||| | || || | | | | |||| | || || ||| | Sbjct 680 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 739 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG-- 550289 ||||||||||| ||||| |||| | || |||| ||| || ||| | | ||| Sbjct 740 GATATGAAGCACTGGCCGTTCCGTGTGGTGAATGAGGGTGGCAAGCCTAAGGTGCAAGTG 799 Query 550290 --CTACTCATGAAGGATCTGTTAAACA-ATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 ||| |||| | | | || | || | ||||| | || || ||||| Sbjct 800 GAGTAC-----AAGGGTGAGATGAAGACCTTCTTCCCAGAGGAGATCAGCTCCATGGTCC 854 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | || ||||| | | || || | | | || | | || | |||| || | Sbjct 855 TCACCAAGATGAAGGAGATTGCTGAGGCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCA 914 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || || || || || |||||||| || || || || || ||||||||||| | Sbjct 915 TCACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCA 974 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 | |||| |||||||| | ||||||||||| || || || || ||||| | || |||| Sbjct 975 TCACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATG 1034 Query 550527 GACTTG 550532 | |||| Sbjct 1035 G-CTTG 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4025764107999650