Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq54874 123 2e-22 seq895 113 3e-19 seq56936 93.3 3e-13 >seq54874 Length=50929 Score = 123 bits (136), Expect = 2e-22 Identities = 363/552 (66%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAA 474388 ||||| || || || || || || || ||| ||||| | ||| | || |||| ||| Sbjct 500 GCAATCGGCATCGACTTGGGCACCACGTACTCCTGTGTGGGTGTCTTCCAGCATGGCAAA 559 Query 474389 GTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACT 474448 || || || || ||||||||||| || || | || ||||| ||||| | || ||| Sbjct 560 GTGGAGATCATCGCCAATGACCAGGGCAACCGCACCACACCCAGCTATGTGGCCTTCACT 619 Query 474449 GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAAT 474508 || || || | || || || |||||||| || | || | || || ||| || Sbjct 620 GATACAGAGCGCCTCATCGGCGATGCTGCCAAGAACCAGGTGGCTATGAACCCTACCAAC 679 Query 474509 ACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCT 474568 || || |||||||| || | | || || || || | |||||| |||| || || ||| Sbjct 680 ACCATCTTTGATGCCAAGCGTCTCATCGGCCGCAAGTATGATGACCCCACGGTGCAGTCT 739 Query 474569 GATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--G 474626 |||||| || ||||| || ||| | |||| ||||| || || | | || | Sbjct 740 GATATGAAGCACTGGCCGTTCCGTGTGGTGAATGAGGGTGGCAAGCCTAAGGTGCAAGTG 799 Query 474627 CAATACACGCAGGTGAAACTAA-ACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 | |||| | ||||| | || || | ||| || || | || || ||||| | Sbjct 800 GAGTACAAG--GGTGAGATGAAGACCTTCTTC-CCAGAGGAGATCAGCTCCATGGTCCTC 856 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| ||||| | | || ||| | ||||| || | | || |||| || || Sbjct 857 ACCAAGATGAAGGAGATTGCTGAG-GCCTATCTGGGGCGCAAGGTGCAGAATGCTGTCAT 915 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 || || || || || || ||||| || || || || || || |||||||| || | || Sbjct 916 CACAGTGCCTGCTTACTTCAATGACTCCCAGCGCCAGGCCACCAAAGATGCTGGCACCAT 975 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 | || |||||||| | |||||||| || || || |||||||| || | || ||||| Sbjct 976 CACTGGCCTTAATGTGATGCGTATTATCAACGAGCCCACAGCAGCTGCTATAGCCTATGG 1035 Query 474865 TCTTGATAAGAA 474876 | || ||||| Sbjct 1036 CTTGGACAAGAA 1047 >seq895 Length=11182 Score = 113 bits (124), Expect = 3e-19 Identities = 225/328 (69%), Gaps = 4/328 (1%) Strand=Plus/Plus Query 475496 ACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACTGTTGAAGTT 475555 ||||| || || ||||| ||||| |||| |||||| || || | | | ||||| | Sbjct 2233 ACTGCATGCGAGCGTGCAAAGCGTACTCTGTCTTCTAGCACGCAGGCCAGTATTGAAATA 2292 Query 475556 GATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAATTTGAAGAT 475615 |||||||| | ||| || ||||| | | || ||||| || ||| |||||||| Sbjct 2293 GATTCTCTCTATGAGGGTATTGACTTCTACACATCCATTACCAGAGCTCGCTTTGAAGAG 2352 Query 475616 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTCAGAGATTCT 475675 | |||| || || | || | || || |||||| | | || ||||| || Sbjct 2353 CTGAACGCTGACCTGTTCCGTGGTACCTTGGATCCTGTTGAAAAGGCCCTGCGAGATGCT 2412 Query 475676 AAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACAAGAATTCCA 475735 ||||| |||||||| || ||||||| ||||| || || || || || || | || ||| Sbjct 2413 AAACTCGACAAATCTCAGATCCATGACATTGTGCTGGTTGGTGGGTCTACTCGTATCCCA 2472 Query 475736 AAAATAAGAGAAA-TGCTTTCATCATATTTT-AATGGTAAAAAGTTAAATGAAAGTGTAA 475793 || || ||||| |||| || || | || ||||| ||| || | || | || | | Sbjct 2473 AAGATTC-AGAAACTGCTG-CAGGATTTCTTCAATGGCAAAGAGCTGAACAAGAGCATCA 2530 Query 475794 ATCCTGATGAAGCTGTTGCATATGGAGC 475821 |||||||||||||||| || ||||| || Sbjct 2531 ATCCTGATGAAGCTGTGGCTTATGGTGC 2558 Score = 98.7 bits (108), Expect = 6e-15 Identities = 77/92 (84%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||| |||||||||||||| || ||||| |||||||| || |||||||||||||| Sbjct 3490 GGTATTCCCCCTGCTCCCAGAGGTGTACCTCAGATTGAAGTAACCTTTGATATTGATGCC 3549 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| || || ||||| ||||| ||||| Sbjct 3550 AATGGCATCCTGAATGTGTCTGCTGTGGATAA 3581 >seq56936 Length=3908 Score = 93.3 bits (102), Expect = 3e-13 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || | |||||| || ||||| |||||||| || || | || Sbjct 455 TTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 396 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||| ||||||||||| || ||||| |||||| ||||| || ||| Sbjct 395 TGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCA 336 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || ||||| || || || || || || ||||| ||||| || || Sbjct 335 CTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 280 Score = 87.8 bits (96), Expect = 1e-11 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || ||||||| || || | |||||| || ||||| |||||||| || || | || Sbjct 1139 TTGTAATCAGACAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGC 1080 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||| ||||||||||| || ||||| |||||| ||||| || ||| Sbjct 1079 TGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTGTCA 1020 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || | | || ||||| || || || || || || ||||| || || || || Sbjct 1019 CTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTG 964 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3265314467309180