Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq18406 208 9e-49 seq7985 84.2 3e-11 >seq18406 Length=30580 Score = 208 bits (230), Expect = 9e-49 Identities = 595/909 (65%), Gaps = 7/909 (1%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 ||||||||| || || |||| ||||| || || || |||||| || ||| || | Sbjct 19647 TGTGTCGCAAATACTCTTCCAAACATTTCACTGCAAAAGGGTCAACATCAGTGTCAAACT 19706 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACA 160164 |||| || || | ||||| ||| |||| ||||||| || |||||| ||| || | Sbjct 19707 TATTAGCAAAGAAGTGGTG---GTTTCGTAGCATCCAGTTCAGGTCTCCTACCCCAAAAA 19763 Query 160165 CGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGT 160224 | ||||| || || | || || || |||| || ||||| | || ||||| | ||| | Sbjct 19764 CACAGACAGAGCGAACATGAACTCCACTGCATGGTGGGTAGGGTGCACCTTTGGACACAT 19823 Query 160225 CACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGT 160284 | ||||| ||||||||||||| ||||||||||| | || | |||||| || |||| Sbjct 19824 CGCCTTCAAAGTACTGCCACTTGACAAACCTGGCCAGTGCATTCATGTCAGAAACATCGT 19883 Query 160285 ATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCAC 160343 | |||| || || | ||| ||||| || || | || || | ||| | || |||||| Sbjct 19884 ACTTGT-CACTAGAAGAAACTGCACCTGGGACTTCAGGGATTCTCTGAATTGTTGCCCAC 19942 Query 160344 AGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTG 160403 |||| || || ||||| || ||||| || | ||| || ||||||| ||| ||| Sbjct 19943 AGGTACTCATCTGGGCTATAAGTGTCTTTTGCCCACTCAATGAACTTAAGTATTTTGCTG 20002 Query 160404 TCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAAT 160463 | || | || | |||| | || ||||| || || || || || || Sbjct 20003 CTTTCTAATACATATTCTACAAATCTTCTGCTAACTACAAAATAGGCACTACCAGAAAAA 20062 Query 160464 ATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTC 160523 || || | | ||| || | |||||| || || || | || | Sbjct 20063 ATTGGAGTACTGAGAGGTGGTAGTTGTTTGTCTATGCCTGTATTCTTTATTTTACCATCA 20122 Query 160524 ACCAGCGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCT 160583 | | | | || | ||||||||||| || || | ||||| ||| || || Sbjct 20123 ATAATCTCATGGTGTTTCTTCCACCTTACTTCTTTATAAACAGGCATTTTTTCTGTTTCC 20182 Query 160584 AGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGC 160643 | ||||| |||| | || | ||| | | || || || || | || ||||| | Sbjct 20183 AAGCTGTTTTCACCTTTAAGGGCTTTTAATTTCTCTACTATTTCCTGATTGGTCTTTATA 20242 Query 160644 GGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGG 160703 |||||||| | || || | |||||| | ||| ||||| | | || || || Sbjct 20243 GGAAAGTCCATGCCACAGAGGTTTATTAGGTATTTCCAGCTTGAACTTCTTCTGTAGAGA 20302 Query 160704 TCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCT 160763 || ||||||| ||||| ||||||||||| | |||||| ||||| || || || ||||| Sbjct 20303 TCTTTCATGCAGTTAATGTCTGCCTGCACTCTGCTCCATGAAGCATATACAACACTCTCT 20362 Query 160764 AGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAG 160823 | | |||| | |||||| ||||| ||||| || || |||||| ||| | ||| || Sbjct 20363 AACTGTCTGGAAATAAAGACATTATCAAAACATGAGACTATTCCCTTCACAG-CAGCAAA 20421 Query 160824 AACATCTTAT-CCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGAT 160882 || | || | | |||| ||| || || | ||| || | ||||| || || ||||| Sbjct 20422 AAAAGATTCTGGAGACTTTTTGTCAACATGAATGCAGTAAAAATTCTGGGGGGCATAGAT 20481 Query 160883 GGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTAT 160942 | || || | || || | |||||| || || |||| | ||| || ||||| || || Sbjct 20482 TGATCTTAGAAGTCTATCCAGCATCTCAATTTTGTGATAAACCACTATTGAGTAAGCAAT 20541 Query 160943 CGGAAACTC 160951 ||||| || Sbjct 20542 TGGAAATTC 20550 >seq7985 Length=643 Score = 84.2 bits (92), Expect = 3e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 160268 CATGTCGGAGGTGTCGTATTTGTACATCAGG-GGAACGGCACCGGGAACGCCGGGCATAC 160326 |||||| ||| | | | |||| ||| || |||| ||| || || ||||||||||||| Sbjct 24 CATGTCTGAGAGCTGGAACTTGT-CATTTGGAGGAATGGCGCCTGGCACGCCGGGCATAC 82 Query 160327 GCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGA 160386 | | ||||||||||| | ||| || || |||||||| |||||||| | ||| || | || Sbjct 83 GGTTGAGGGTGGCCCAGACGTGCTCATCAGGGCTGTAGGTGTCCTTGGCCCACTCAAGGA 142 Query 160387 ACT 160389 ||| Sbjct 143 ACT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576737330196600