Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq48313 158 1e-32 seq39782 158 1e-32 seq17961 152 6e-31 seq45470 143 3e-28 seq44577 143 3e-28 seq23379 131 2e-24 seq16332 125 9e-23 >seq48313 Length=1268 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || ||||| || ||||||||||| |||| || Sbjct 680 GCTTGGCCAGCTCCCCCGGCAGCAGGAGCCGCACAGCCGTCTGGATCTCCCGCGAAGTGA 621 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 620 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 561 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 560 TGTCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 501 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 500 GCACCTGCTTCAGCACCTTGTA 479 >seq39782 Length=8611 Score = 158 bits (174), Expect = 1e-32 Identities = 156/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| |||| || Sbjct 7904 GCTTGGCCAGCTCACCTGGCAGCAGGAGCCGCACGGCCGTCTGGATCTCCCGCGAAGTGA 7963 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || |||||| | ||||||| |||| | Sbjct 7964 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAAGCCTCGCCGGCGATGCGCTCGAAGA 8023 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| |||||||| |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 8024 TGTCATTGACAAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 8083 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 8084 GCACCTGCTTCAGCACCTTGTA 8105 >seq17961 Length=2001 Score = 152 bits (168), Expect = 6e-31 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || | ||| | || ||||| || ||||||||||| |||| | || Sbjct 1290 GCTTGGCCAGCTCACGCGGCAGCAGGAGCCGCACAGCCGTCTGGATCTCCCGCGAGGTGA 1349 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 1350 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 1409 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 1410 TGTCATTGACGAAAGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 1469 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 1470 GCACCTGCTTCAGCACCTTGTA 1491 >seq45470 Length=4528 Score = 143 bits (158), Expect = 3e-28 Identities = 153/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || ||||| || ||||||||||| |||| || Sbjct 3854 GCTTGGCCAGCTCACCCGGCAGCAGGAGCCGCACAGCCGTCTGGATCTCCCGCGAAGTGA 3795 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||||| |||| | Sbjct 3794 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCGGCGATGCGCTCGAAGA 3735 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 3734 TATCGTTGACGAAGGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCCGTGTCGGGGT 3675 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||| ||||| ||||| Sbjct 3674 GGACCTGCTTCAGCACTTTGTA 3653 >seq44577 Length=27313 Score = 143 bits (158), Expect = 3e-28 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || | | | |||||||||||| ||||| ||||| || | | || Sbjct 14988 GCTTGGCCAGCTCTCCCGGGAGCAGCAGGCGCACGGCCGTCTGAATCTCCCGGGAGGTGA 15047 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | || ||||| ||| ||| || ||||||| |||| | Sbjct 15048 TGGTGGAGCGCTTGTTGTAATGGGCCAGGCGGGAGGCTTCTCCAGCGATGCGCTCGAAGA 15107 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | |||| ||||||||| |||||||| Sbjct 15108 TGTCGTTGACGAAGGAGTTCATGATGCCCATAGCCTTGGAGGAGATGCCGGTGTCGGGGT 15167 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||||||||||| Sbjct 15168 GGACCTGCTTCAGCACCTTGTAGA 15191 >seq23379 Length=7530 Score = 131 bits (144), Expect = 2e-24 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || || ||| | || |||||||| ||||||||||| |||| || Sbjct 1534 GCTTGGCCAGCTCACCCGGCAGCAGAAGCCGCACGGCTGTCTGGATCTCCCGCGAAGTGA 1593 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| |||||||||| || ||||||| | ||||| |||| | Sbjct 1594 TGGTGGAGCGCTTGTTGTAGTGCGCCAGGCGAGAGGCCTCGCCAGCAATGCGCTCGAAGA 1653 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| || |||||||||| ||| | |||| |||||||| || |||| Sbjct 1654 TGTCATTGACGAAGGAGTTCATGATGCCCATAGCCTTGGACGAGATGCCTGTATCAGGGT 1713 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||| ||||| Sbjct 1714 GCACCTGCTTCAGCACTTTGTA 1735 >seq16332 Length=1818 Score = 125 bits (138), Expect = 9e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| | | | || |||||||||||||| ||||| |||| | || Sbjct 1436 GCTTGGCCAGCTCGCCAGGTAACAGGAGCCGCACGGCGGTCTGAATCTCTCGCGAGGTGA 1377 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||||||| |||| || | || ||||| ||||||| |||| | Sbjct 1376 TGGTGGAACGCTTGTTGTAGTGGGCTAAGCGCGACGCCTCACCTGCGATGCGCTCGAAAA 1317 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| || |||||||||| ||| | |||| |||||| || |||||||| Sbjct 1316 TATCGTTGACGAAAGAGTTCATGATGCCCATAGCCTTGGAGGAGATACCAGTGTCGGGGT 1257 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 |||||||||| | ||||||||||| Sbjct 1256 GCACCTGCTTCAACACCTTGTAGA 1233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6101658510145845