Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq56936 136 3e-27 >seq56936 Length=3908 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | ||| ||||||||| ||||| ||||| || Sbjct 959 CCACCTCTCAGGCGCAGCACAAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCTGAC 900 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || ||||||||||| | ||||| || | || Sbjct 899 AGGGTGCGACCATCTTCCAGCTGCTTGCCTGCGAAGATCAGCCTCTGCTGATCCGGAGGA 840 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || |||||| | || | ||| ||| || || Sbjct 839 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGTTCAACC 780 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 |||| ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 779 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 732 Score = 125 bits (138), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| |||| ||| | ||| |||||||| ||||| || || || Sbjct 1187 CCACCTCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 1128 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||| ||| | || Sbjct 1127 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 1068 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 1067 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 1010 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 1009 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATG 960 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 34748 TTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCC 34807 || || ||||||| | ||| || ||||| | ||| |||||||| ||||| ||||| Sbjct 1418 TTACCACCCCTCAGGCGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAGTCG 1359 Query 34808 GATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGC 34867 || ||| |||| | || ||||| ||||| || || |||||||| | ||||| || | Sbjct 1358 GACAGGGTGCGACCGTCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGG 1299 Query 34868 GGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCG 34927 || | || |||||||| | || || ||||| | | || | ||| ||| ||| Sbjct 1298 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCA 1239 Query 34928 ACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || || | |||||| ||||||||||||||| Sbjct 1238 ACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 1188 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| |||| ||| | ||| |||||||| ||||| || || || Sbjct 503 CCACCTCTCAGGCGCAGCACCAAGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 444 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||| ||| | || Sbjct 443 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 384 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | || |||||||| | || || ||||| || || || | ||| ||| ||| | Sbjct 383 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAA 326 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || | ||| |||||||| || || |||||||| || ||||||||||| Sbjct 325 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 277 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || |||| | ||| || ||||| | ||| |||||||| ||||| || || || Sbjct 731 CCACCTCTCAGGCGCAGCACAAGGTGCAGAGTGGATTCCTTCTGGATGTTGTAATCAGAC 672 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| |||| |||| ||||| ||||| || || |||||||| | ||||| || | || Sbjct 671 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCGGGGGGA 612 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || |||||||| | || || ||||| | | || | ||| ||| ||| || Sbjct 611 ATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACC 552 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| || || | |||||| ||||||||||||||| Sbjct 551 TCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCATG 504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325427704889915