Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq895 116 3e-20 >seq895 Length=11182 Score = 116 bits (128), Expect = 3e-20 Identities = 366/557 (66%), Gaps = 24/557 (4%) Strand=Plus/Minus Query 281777 GCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAA 281836 |||||||| || ||||||||||||||||| | | | || || | ||| |||||||| Sbjct 2558 GCACCATAAGCCACAGCTTCATCAGGATTGATGCTCTTGTTCAGCTCTTTGCCATTGAAG 2499 Query 281837 AAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACTAATACAAT 281895 |||| || |||| ||| | ||| || ||||||| || || ||||| | ||||| Sbjct 2498 AAATCCTGCAGCAGTT-TCTGAATCTTTGGGATACGAGTAGACCCACCAACCAGCACAAT 2440 Query 281896 TTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAAC-GGGTTCAA 281954 ||||| | ||| ||||| || ||||| | ||| | | |||||||| || | ||| Sbjct 2439 GTCATGGATCTGAGATTTGTCGAGTTTAGCATCTCGCAGGGCCTTTTCAACAGGATCCAA 2380 Query 281955 G--ACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA--GA-GT 282009 | |||| | |||| ||| | || ||||| || |||||| |||| || || Sbjct 2379 GGTACCA---CGGAACAGGTCAGCGTTCAGCTCTTCAAAGCGAGCTCTGGTAATGGATGT 2323 Query 282010 GACATTATAA-TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAG 282068 | || || ||||| || || | | |||||| | |||||| | | || || || Sbjct 2322 G----TAGAAGTCAATACCCTCATAGAGAGAATCTATTTCAATACTGGCCTGCGTGCTAG 2267 Query 282069 AAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGG----CTTTT 282124 |||| || | ||| || ||||| || ||||| || | || | || | | ||| | Sbjct 2266 AAGACAGAGTACGCTTTGCACGCTCGCATGCAGTGCGGAGGCGACGAACTGCTCTCTTGT 2207 Query 282125 GCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACA 282184 || | |||| ||| | || | || | |||||| || | | | | || Sbjct 2206 TCTCACTGAT----GTCTTTCTTGTGCTTGCGCTTGAATTCAGCGATGAAGTGGTTGACC 2151 Query 282185 AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGG 282244 | ||||| ||||| ||||| || ||||| | || | |||| || | | || | Sbjct 2150 ATGCGATTGTCAAAGTCTTCTCCACCCAAGTGGGTGTCACCTGCAGTGGACTTCACCTCA 2091 Query 282245 AAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAA 282304 || | |||||||||| || || || | |||||| ||| ||||| || | ||||| Sbjct 2090 AATATGCCATCTTCAATAGTCAGAATTGACACATCAAAGGTGCCACCTCCAAGGTCAAAG 2031 Query 282305 ATAAGTACATTCATTTC 282321 ||||| |||||| |||| Sbjct 2030 ATAAGAACATTCCTTTC 2014 Score = 113 bits (124), Expect = 3e-19 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||||| |||||||||||||| | |||| |||| | || || ||||| ||||||| Sbjct 947 CAAAAACTGTATTGGTTGGATTCATTGCAACTTGGTTCTTTGCAGCATCGCCAATCAACC 888 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | ||| || ||| || ||||| ||||| || ||||| |||| Sbjct 887 TCTCCGTATCTGTGAAGGCAACGTAGCTTGGCGTGGTGCGGTTACCCTGGTCATTGGCAA 828 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | ||||| || || |||| ||| ||||||| ||||| | | || || || | ||||| Sbjct 827 TGATTTCCACCTTCCCATGTTGGAATACACCAACACAGGAATAGGTGGTGCCAAGATCAA 768 Query 282870 TACCAATAGC 282879 | || | ||| Sbjct 767 TTCCGACAGC 758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3737351538733410