Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq56936 138 1e-27 seq3258 98.7 1e-15 >seq56936 Length=3908 Score = 138 bits (152), Expect = 1e-27 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || |||||||| || ||| ||| | || || ||||||||||| Sbjct 473 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTGCC 415 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| || ||||| |||||||||||||| |||||| ||| Sbjct 414 AGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 355 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 354 GACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 295 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 294 CTTCACGAAGATCTGCAT 277 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||||| || ||||| || || ||| ||| | || || ||||||||||| Sbjct 929 GTGGACTCCTTCTGGATGTTGTAGTCTGACAGGGTGCGACCA-TCTTCCAGCTGCTTGCC 871 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || |||| |||||| || ||||| |||||||||||||| |||||| ||| Sbjct 870 TGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 811 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| |||| || || || | ||||| ||| ||||| ||||| || Sbjct 810 GACGTTCTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGT 751 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 750 CTTCACAAAGATCTGCATG 732 Score = 136 bits (150), Expect = 4e-27 Identities = 151/199 (76%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || |||||||| || ||| ||| | || || ||||||||||| Sbjct 1157 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTGCC 1099 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| || ||||| |||||||||||||| |||||| ||| Sbjct 1098 AGCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1039 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||||| ||||||| || || | ||||| ||| ||||| ||||| || Sbjct 1038 GACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGT 979 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 978 CTTCACAAAGATCTGCATG 960 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || |||||||| || ||| ||| | || || ||||||||||| Sbjct 701 GTGGATTCCTTCTGGATGTTGTAATCAGACAGGGTGCGACCA-TCTTCCAGCTGCTTGCC 643 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| ||||| || |||||||||||||| |||||| ||| Sbjct 642 AGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 583 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || || | ||||| ||| ||||| |||| || Sbjct 582 GACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGT 523 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 522 CTTCACAAAGATCTGCATG 504 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || ||||| ||| || ||| ||| ||| || ||||||||||| Sbjct 1385 GTGGATTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACC-GTCTTCCAGCTGCTTGCC 1327 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| |||||| ||||| || |||||||||||||| |||||| ||| Sbjct 1326 AGCAAAGATCAGCCTCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCCTT 1267 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| ||||||| || || | ||||| ||| ||||| |||| || Sbjct 1266 GACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGT 1207 Query 133643 TTTTACGAAAATCTGCATG 133661 || || || ||||||||| Sbjct 1206 CTTCACAAAGATCTGCATG 1188 >seq3258 Length=22478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 148867 ACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGC 148926 |||| || || || | |||||||||||||||||||| |||| ||||| ||||||| Sbjct 10406 ACTCCACTATTTCTGTACACAGATTGCTGCATTTGATGGTTCCCAAGTTCTGCTGATTGC 10347 Query 148927 TCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTC 148975 |||| | |||||| | ||| ||||||||||||||||| |||||| || Sbjct 10346 TCTTCCGGTTGCAAGAGTCTTTGTACAGCATGTACGGGGTGCCAGTCTC 10298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483017234273400