Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq48313 176 6e-38 seq17961 176 6e-38 seq39782 170 3e-36 seq45470 167 3e-35 seq44577 152 7e-31 seq23379 149 9e-30 seq16332 143 4e-28 >seq48313 Length=1268 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 479 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 532 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| ||||||| | ||||||| |||| Sbjct 533 GGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 592 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| || ||||| Sbjct 593 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCGCGGGAGATCCAGACGGCTGTGCGG 652 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||||||| | ||||||||||||| Sbjct 653 CTCCTGCTGCCGGGGGAGCTGGCCAAGCACGCCCTGTCCGAGGGCACCA 701 >seq17961 Length=2001 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 1491 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 1438 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||||| | ||||||| |||| Sbjct 1437 GGCATCATGAACTCTTTCGTCAATGACATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 1378 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| | |||| ||||||||||| || ||||| Sbjct 1377 CTGGCGCACTACAACAAGCGCTCCACCATCACCTCGCGGGAGATCCAGACGGCTGTGCGG 1318 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| | || ||||||| ||||||||| ||||||||||||| Sbjct 1317 CTCCTGCTGCCGCGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 1269 >seq39782 Length=8611 Score = 170 bits (188), Expect = 3e-36 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| || || |||| || |||| ||||| Sbjct 8105 TACAAGGTGCTGAAGCAGGTGCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 8052 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| |||||||| ||||| |||| ||||||| | |||||| |||| Sbjct 8051 GGCATCATGAACTCCTTTGTCAATGACATCTTCGAGCGCATCGCCGGCGAGGCTTCTCGC 7992 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 7991 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCGCGGGAGATCCAGACGGCCGTGCGG 7932 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||||||||| || ||||| |||| Sbjct 7931 CTCCTGCTGCCAGGTGAGCTGGCCAAGCACGCCGTGTCTGAGGGTACCA 7883 >seq45470 Length=4528 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||| |||||| || || |||| || |||| ||||| Sbjct 3653 TACAAAGTGCTGAAGCAGGTCCACCCCGACAC-----GGGCATC-TCGTCCAAGGCCATG 3706 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || |||||||| || |||| ||||||| | ||||||| |||| Sbjct 3707 GGCATCATGAACTCCTTCGTCAACGATATCTTCGAGCGCATCGCCGGCGAGGCCTCTCGC 3766 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| || ||||| Sbjct 3767 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCGCGGGAGATCCAGACGGCTGTGCGG 3826 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||||||||| ||||||||||||| Sbjct 3827 CTCCTGCTGCCGGGTGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 3875 >seq44577 Length=27313 Score = 152 bits (168), Expect = 7e-31 Identities = 181/244 (74%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||||| |||||||| |||||| |||| |||| Sbjct 15204 TACTCCATCTATGTCTACAAGGTGCTGAAGCAGGTCCACCCCGACACCGG-----CATC- 15151 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| | ||| ||||||||||| || ||||||||||| |||| ||||||| Sbjct 15150 TCCTCCAAGGCTATGGGCATCATGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCT 15091 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 || ||| |||||||| | | |||||||||| ||| ||| | | || ||||| Sbjct 15090 GGAGAAGCCTCCCGCCTGGCCCATTACAACAAGCGCTCCACCATCACCTCCCGGGAGATT 15031 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| |||||||||||| | | | || || ||||||| |||||| ||||| |||||| Sbjct 15030 CAGACGGCCGTGCGCCTGCTGCTCCCGGGAGAGCTGGCCAAGCACGCTGTCTCAGAGGGC 14971 Query 725139 ACCA 725142 |||| Sbjct 14970 ACCA 14967 >seq23379 Length=7530 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||| ||||| |||||||||||||| || | |||| || |||| | ||| Sbjct 1735 TACAAAGTGCTGAAGCAGGTGCACCCTGATACAGG-----CATC-TCGTCCAAGGCTATG 1682 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||| ||||| |||| ||||| | ||||||| |||| Sbjct 1681 GGCATCATGAACTCCTTCGTCAATGACATCTTCGAGCGCATTGCTGGCGAGGCCTCTCGC 1622 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| || |||||||||| ||| ||| |||| ||||||||||| |||||||| Sbjct 1621 CTGGCGCACTACAACAAGCGCTCCACCATCACTTCGCGGGAGATCCAGACAGCCGTGCGG 1562 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || || ||||||| ||| ||||| ||||||||||||| Sbjct 1561 CTTCTGCTGCCGGGTGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 1513 >seq16332 Length=1818 Score = 143 bits (158), Expect = 4e-28 Identities = 179/244 (73%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| | ||||||||||||||| || | | ||| Sbjct 1220 TACTCCATCTATGTCTACAAGGTGTTGAAGCAGGTGCACCCCGACACTGGT-----ATC- 1273 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| | ||| ||||||||||| || |||||||| || |||| ||||||| Sbjct 1274 TCCTCCAAGGCTATGGGCATCATGAACTCTTTCGTCAACGATATTTTCGAGCGCATCGCA 1333 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||| ||| | || | || ||||||||| ||| ||| | |||| ||||| Sbjct 1334 GGTGAGGCGTCGCGCTTAGCCCACTACAACAAGCGTTCCACCATCACCTCGCGAGAGATT 1393 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 |||||||||||||| || | | | ||||| ||||||| |||||||||||||||||| Sbjct 1394 CAGACCGCCGTGCGGCTCCTGTTACCTGGCGAGCTGGCCAAGCACGCCGTCTCCGAGGGT 1453 Query 725139 ACCA 725142 |||| Sbjct 1454 ACCA 1457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171369663999170