Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq47146 132 7e-26 seq30157 129 8e-25 seq3258 105 9e-18 >seq47146 Length=33513 Score = 132 bits (146), Expect = 7e-26 Identities = 111/136 (82%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || || || || ||||||||||| || || | ||| | Sbjct 19275 CCTCATCTCTGCTTATAAGTTCATTGGAGAAAGTCAGTCCAGGCATCAGGCCCCTCTTCT 19216 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||||| | Sbjct 19215 TCAGCCAAAATATAGCAGCAAAGGAACCCGAAAAGAAGATGCCTTCAACTGCAGCAAAGG 19156 Query 39759 CAACAAGTCTCTCTCC 39774 |||| | |||||| || Sbjct 19155 CAACCACTCTCTCACC 19140 Score = 91.5 bits (100), Expect = 2e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 39988 AAATCTTTC-CGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046 ||| ||||| | ||| |||||||| || ||||||||||| || ||||||||||||| | Sbjct 14131 AAAGCTTTCTCACCAGGTTTTCATTTACAATTCCATCACTGGCTGCAAAAAATGCCAGAA 14072 Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106 |||| ||||| ||||||||||| | | ||| || ||||||| | | || |||| Sbjct 14071 CATGAGAGATAAAGTATTTTTCATCTGCTTTCAGCTTGTTCCAGTGAGGAAGGTCCTTTG 14012 Query 40107 ATATATCTAC 40116 ||| ||| || Sbjct 14011 ATAAATCAAC 14002 >seq30157 Length=13407 Score = 129 bits (142), Expect = 8e-25 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||||| || | ||| |||||||| |||||||||||||||| || | || | Sbjct 9696 CCTCATCTCTACTGATGAGTTCATTAGAAAAAGTGAGTCCAGGCATTAATCCTCTTTTCT 9755 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | |||||||| || | |||||||| |||||||||||||| ||||| ||||||||||| | Sbjct 9756 TCAGCCAAAAAATTGATGCAAAAGAGCCAGAAAAGAAGATTCCTTCCACTGCTGCAAAAG 9815 Query 39759 CAAC 39762 | || Sbjct 9816 CTAC 9819 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 39311 GACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCT 39370 ||||| |||||||| | || |||||||| || || ||||| || ||||| || |||||| Sbjct 8397 GACATGACTCCCATCCTCTGATATTCACCTACTCGCTTCTCAAAGAAATTGGTCTTGCCT 8456 Query 39371 TCCAATGATATATTTTCCATGAAATCAAACGGATT 39405 |||| || || ||||||||||| ||||| ||||| Sbjct 8457 TCCAGAGAGATGTTTTCCATGAAGTCAAAAGGATT 8491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | ||||| |||||||||||||| || ||||| || || Sbjct 12424 ATCTTTAATGTAAGTATCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 12483 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || |||||||| ||| Sbjct 12484 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 12529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 39877 ATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGC 39936 |||||||| || ||||| || | ||||| |||||||||||||| || ||||| || || Sbjct 12624 ATCTTTAATGTAAGTATCAATAAGAAGACTGTACATTTCTGAATGTATATTTTCCATGGC 12683 Query 39937 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 ||||| || || || ||||| | ||||| || |||||||| ||| Sbjct 12684 AATCTGGAAGCCATAGAAACAACGAGCTTCTGTGATTTGTACTTCT 12729 >seq3258 Length=22478 Score = 105 bits (116), Expect = 9e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| |||| ||| || ||||| ||||| ||||| || | || || || ||||| || | Sbjct 2858 CACTGAATACTTTCTTAGTTTCTTTGTGCAAATTGGACACTGCAATCCTTGCTGCCAGGA 2799 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| |||| || || || || || |||| ||||| | |||||| | Sbjct 2798 TAGCATAGTCAGGGTGTTTGGTGGTCAGGGTGGCAGCCGTTTCAGCAGCCAGCGTATCCA 2739 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || ||||| ||||| |||||||||| Sbjct 2738 GTTCCACCGTCGTGACACCACTGTACAGCCCCTGAATCACTTTCATGG 2691 Score = 84.2 bits (92), Expect = 3e-11 Identities = 121/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| || ||||| ||||| || || |||||| || | || || || || || || | Sbjct 17039 TCCACCCATAGAAGTGCATGCTGGTGAGTTTGCCGTAGTTGGGTTCTGCAATGTGGATGT 16980 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 | | || || || ||||| |||||||||||||| ||||| ||||| || | ||| | | Sbjct 16979 TGAGAGACTGGCTCTGATCAATGAAAGCTCCTCTGTCTGCTGCCATCTTGAGGATAGTTT 16920 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | || ||||| | |||||| | | || || | ||||| |||| Sbjct 16919 TCTGTGAGATCTCCCATACTGTCTTATAGAGTTGCTTCAAGTCATCAGGAA 16869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686335359947400