Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3258 109 6e-19 >seq3258 Length=22478 Score = 109 bits (120), Expect = 6e-19 Identities = 116/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 104888 TGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGAC 104947 ||| | ||||| | | |||||||| |||||||| || || |||||||| ||||||||| Sbjct 10271 TGGTACGCTATCATTGAATCTCAAACAGAGACTGGCACCCCGTACATGCTGTACAAAGAC 10330 Query 104948 GCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGT 105007 | || |||| ||||| ||||| |||| ||||| ||||| | |||||| ||| Sbjct 10331 TCTTGCAACCGGAAGAGCAATCAGCAGAACTTGGGAACCATCAAATGCAGCAATCTGTGT 10390 Query 105008 ACAGAAATCTTGGAATTTACAGACAAAGATGAG 105040 |||||||| |||| ||||| |||||||||| Sbjct 10391 ACAGAAATAGTGGAGTTTACCAGCAAAGATGAG 10423 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 105506 AACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 105565 ||||| || ||| | |||| |||||||| || || || || || |||||||| ||||| Sbjct 14212 AACAGCCTTCTCCTTTCTCCCATGCCAACTGCTTCTACTGCTCAGATCTTGGGCAATAAC 14271 Query 105566 GAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTT 105625 |||| | | ||||||||||| | ||||||||| | ||| |||| ||||||||||| Sbjct 14272 GAATCCATCGAACCCTACACCAGTAACATCTATACACGCAGAGTCCTCTCGGGAGAGTTT 14331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582773886593400