Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phaethon_20lepturus_20[refseq_20GCF_5F000687285.1_202014-05-08] 66,785 sequences; 1,152,958,507 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq56947 161 1e-34 seq23637 113 6e-20 seq11035 100 4e-16 >seq56947 Length=21546 Score = 161 bits (178), Expect = 1e-34 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 9244 ATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGA 9303 ||||||| ||||| ||||| || ||||| ||| ||| |||||||| || |||||||| Sbjct 3130 ATGAGTCTGGTGGTTTGGAAGAGCTGCTCATCATCCCACTCTGGATGCTCCTGTTTCAGG 3071 Query 9304 ACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGT 9363 | || || |||| |||||||||||| ||||| || || ||||||||||| | || || Sbjct 3070 ATGTCACAGACCCGGTTGTGTTCCCTCAGCCATATTGTAGCGTACATCATCAAGCCTGGG 3011 Query 9364 ACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGA 9423 |||| || || |||| || ||||||| | ||| || ||| || | | ||||| Sbjct 3010 ACCAAACCGAACACCTCCTGCCCGACAGAAAACTGCAAGTGTTCAGGTATGTGAGGAGGG 2951 Query 9424 TAGATCATGTGCACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATC 9483 |||||||| | |||| ||| || |||| || ||||||||||| || ||||||||| Sbjct 2950 TAGATCATCTCTGCCTGAGTGTCCTTCACCGTTGGTGGATACATTTCTCCATCAATCATC 2891 Query 9484 TG 9485 || Sbjct 2890 TG 2889 Score = 159 bits (176), Expect = 5e-34 Identities = 221/308 (72%), Gaps = 1/308 (0%) Strand=Plus/Minus Query 8289 GGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGC 8348 |||| || | || ||||| || || |||||| | |||| || ||| | | || Sbjct 5123 GGAAAGCAGTGAAAGGACAGCCTTTCACGTTGTTGCAGATGAGCTTCTGTAAGGAGGCAG 5064 Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 | |||| ||| | || ||||| | ||| || ||||||||||||||||||||| | |||| Sbjct 5063 TATTGATTATCTCAAAGCCCACTTTTCCACCAAAGGTGCTGGGCTTCCAGTACTCGGGGG 5004 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 ||||||| | || |||| || ||||| || |||||||| || |||| ||| | || Sbjct 5003 AGCAGATAGCATTTCCCATCAGTCCTTTCAGAGAGAACGGTGCTCCCATCTCCACCATTG 4944 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | ||||| |||||||| || || |||||||| || | || || | |||||||||| Sbjct 4943 TTTCACCAAAGATGGCACCTGGTCGTGGCTTTTCTACAAGGAGGCCTGGATACAGCTCCA 4884 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTGT-T 8587 ||| || | |||||| ||||| | ||||| || || || || ||||| ||||| Sbjct 4883 TAGCATCAATGTCTCCATAAAGCTCTTCCAGTTCAGCTGCCATTTCTTTTTCCCCTGTAA 4824 Query 8588 TTATTAAT 8595 ||||| || Sbjct 4823 TTATTGAT 4816 >seq23637 Length=1093 Score = 113 bits (124), Expect = 6e-20 Identities = 167/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||| || ||| |||| || |||||||||| || ||||||||||||||| | |||| Sbjct 521 TCTTAACTATCTCGAAGCCAGTTGCTCCGCCGAATGTACTGGGCTTCCAGTACTCTGGGG 462 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 |||||||| ||| | | || || || ||||| |||||||| || | ||| | |||| Sbjct 461 AGCAGATGGGGTTTCCAAGAAGCCCCTTCAGGGAAAACGGAGCTCCGATCTCCACCATGC 402 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 | || || || || | ||||| |||| || || | || || || || | ||||| Sbjct 401 TTTCTCCAAAAATACCATTGGGCTGGGGTTTCTCAAGCAGCAAGCCCAGATAAAACTCCA 342 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||| |||| |||||| || || | || || || || |||||| ||||||| Sbjct 341 GAGCATCGATGTCTCCATACAGCTCTTCCAGCTCTGCTGCCTTCTCCTCCTCTCCTG 285 >seq11035 Length=1986 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || ||||| | |||||| |||| |||||||| || |||||||| ||||| ||||| Sbjct 348 TCACCGATGAGGATGAGACGAGCCGTCTGGAAGAGCTGCTCGTCGCTCCAGGTGGGATGC 289 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 || ||||||| | ||||| || | |||||| || | ||||||| ||||||||||| Sbjct 288 TCCCGTTTCAGTATGTCGCAGACGCGGTTGTGCTCACGCAGCCAGAGCGTGGCGTACATG 229 Query 9352 ATGAGCCCAGGTACCAGGCCAAA 9374 |||||| || | ||| ||||| Sbjct 228 CAGAGCCCCGGCAGCAGCCCAAA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716278342286400