Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq36291 138 1e-27
seq34552 118 1e-21
>seq36291
Length=4920
Score = 138 bits (152), Expect = 1e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 83143 GAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTG 83202
|||||||||||||||||||| | |||||||||||| || || |||||| ||| |||
Sbjct 300 GAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGGCAGACCGGGGACCAGATGATGTACTG 241
Query 83203 GGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAA 83262
|||| | ||| |||| | ||| ||| || ||||| |||||| |||||
Sbjct 240 CGGGTTGGTCATCAGCGAGGAGGGGTCATCGTGCGGGAAGGGCAGCGCCTCTTTCAGGAA 181
Query 83263 GGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTT 83322
|| |||||| || || || | ||||| |||||||||||||| || | || || ||
Sbjct 180 GGTGAAGAGGGGGTGCGCGTTCTTCCCGTTCACCTCGCACTTCTCAAACATGATGAAATT 121
Query 83323 CGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTC 83373
|||| | ||||||| |||||||| ||||||| || || ||| ||||||
Sbjct 120 GGGCTTGTAGCCGTTGCCAGGACGAACGTGCTCTAGCGAGAGCAGGATCTC 70
>seq34552
Length=757
Score = 118 bits (130), Expect = 1e-21
Identities = 121/156 (78%), Gaps = 3/156 (2%)
Strand=Plus/Minus
Query 83388 TTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTA 83447
|| |||||| || || ||||| || ||||| || ||||| ||||||| ||| | ||
Sbjct 684 TTACCTGGTAGCCAAATTGGTTGCAGGGGAAGCCCAGCACGACCAGCCGCCGGGGG--TA 627
Query 83448 GGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACG 83507
| | | ||||||| ||| | ||| ||||| ||||| |||||| | |||||||||||||
Sbjct 626 GCGGGCT-TGCAGCTGGTTGAGCTGGGTGTAGTCCCGCACCGTGGTGCCTCAGAGGGACG 568
Query 83508 CTACGTTCTCGATGAGCAAGACCCGGCCCCGTAAGA 83543
| |||||||||||||| | || |||||||| ||||
Sbjct 567 CCACGTTCTCGATGAGGACCACGCGGCCCCGGAAGA 532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 608217004757560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |