Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq28340 102 2e-16
>seq28340
Length=39979
Score = 102 bits (112), Expect = 2e-16
Identities = 104/133 (78%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 52057 GCATTTTTTGGAGCTCAGCTAAATTCTTTTATCCATGTTATTATGTACACTTATTATGGT 52116
|| || |||||||||||| | ||| | ||||| ||||| |||||||||| ||||||||
Sbjct 10504 GCTTTCTTTGGAGCTCAGATGAATGCATTTATTCATGTCATTATGTACATGTATTATGGA 10445
Query 52117 ATGGCCGCTTGTGGTCCTATGTT-CAGAAAGTATCTATGGTGGAAACGTTATCTTACTAT 52175
| || || ||||| |||| || |||||| || || ||||||||||| || | || ||
Sbjct 10444 TTAGCTGCCTGTGGCCCTAAATTTCAGAAA-TACCTGTGGTGGAAACGATACTTGACCAT 10386
Query 52176 AATGCAGTTGGTA 52188
| |||| ||||||
Sbjct 10385 ATTGCAATTGGTA 10373
Score = 100 bits (110), Expect = 5e-16
Identities = 109/145 (75%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 52185 GGTACAGTTCCATATAGCTATAGGACATACTGCTATGTCCATTTACATAGATTGCCCGTT 52244
||| ||||||||| | | || || || || || |||| ||||| || ||||| || ||
Sbjct 9870 GGTGCAGTTCCATGTGACCATTGGCCACACAGCCTTGTCTATTTATATTGATTGTCCTTT 9811
Query 52245 TCCAAAATGGATACAGTGGTCAGTTATTATCTATTCTATTAGTTTCATATTACTGTTTGG 52304
|| |||||||| || ||| || ||| ||||| || | | ||||| || ||||||||
Sbjct 9810 CCCTAAATGGATGCACTGGAGTGTAATTTTCTATGCTGTCACCTTCATTTTCCTGTTTGG 9751
Query 52305 TAACTTCTATTTTAGAACATACAAG 52329
||||||||||| | | ||||| |||
Sbjct 9750 TAACTTCTATTATCGGACATATAAG 9726
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 922317581987560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |