Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq2837 259 3e-64
seq53598 91.5 1e-13
>seq2837
Length=1096
Score = 259 bits (286), Expect = 3e-64
Identities = 483/701 (69%), Gaps = 10/701 (1%)
Strand=Plus/Minus
Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922
||| ||||||||| ||||| |||| || ||| |||||| |||||||||||||
Sbjct 696 CCTTCTTCCCCAAGGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGT 637
Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982
|| | |||| |||||||| ||||| ||| | ||| |||| |||||| | |||||||||
Sbjct 636 CCCGGCTGCAGGCTGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCATGGC 577
Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042
||| | || || || || || || || |||||||| |||||||| |||||||| || |
Sbjct 576 GCTACGTCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTGC 517
Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102
||||| ||| || || |||| ||| || |||||||| ||| || || | | ||
Sbjct 516 GTGCCCTAAAGGTGCTGCAGGGGCGGAATAGCATGGAGTCAGAGAAGCCCTCGGCCTTCA 457
Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG-ACACACTGTACCCTACCAGC--A 108159
| | |||||| |||||| | | | ||| | | || || || ||||
Sbjct 456 AGCAGGGGCGCTGGCAATACCACCACAAAGTGGGGGAATTCATCGT--CCGGACAGCCGC 399
Query 108160 AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGG 108219
||| ||| || || || | || | ||||||||||||| || || || ||||||
Sbjct 398 AGA-GAAACTGCCGCCACCCCACAACTCTTCCATGTTCACAGGCAACGCGTACATTGTGG 340
Query 108220 CCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAAT 108279
| | || ||||| || || || |||| || ||||| | || | | || |
Sbjct 339 TCACACGGGCCTTCGTGCAGCACATCTTCGAGAACCCCACGGTGCAGCAGTTCCTCGAGT 280
Query 108280 GGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCC 108337
||| ||| |||||||| ||||| || || ||| | ||||||||||| | || ||| ||
Sbjct 279 GGGCCAAGGACACCTACAGCCCTGATGAGCACGTTTGGGCCACCCTCAACCGCATGC-CC 221
Query 108338 GTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCAT 108397
| | |||| || | | || | ||||| || |||||||||||| ||| |
Sbjct 220 G-GCGTGCCAGGTGCCATGCCCCAAAATGACAAGTTCCAGCTCTCAGACATGAACGCCCT 162
Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457
|| | || |||||||||||||||| ||||| || ||||| ||| ||||| || |
Sbjct 161 GCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCC 102
Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517
|||||| | || || | | | || ||||||| ||||||| || ||| || |||
Sbjct 101 GCCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTG 42
Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558
| | |||||| | || |||||||| || |||||||| ||||
Sbjct 41 GCTGCTCCAGCATCACCACCTCTTAGCCAACAAGTTCGACC 1
>seq53598
Length=28275
Score = 91.5 bits (100), Expect = 1e-13
Identities = 228/343 (66%), Gaps = 4/343 (1%)
Strand=Plus/Minus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
|| || || || ||||| ||| || || ||||| ||||| || ||||| || | ||
Sbjct 19164 CCTCTCAGCAACGAAGAAGCAGAATTTCCAATTGCTTACTCAATTGTGGTTTATCACAAA 19105
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||| | |||| | || || || | | |||||||||||||| | ||||| |
Sbjct 19104 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 19045
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|| || || ||||| ||||| |||| | || || |||| || |||| ||
Sbjct 19044 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTTTCATGT 18985
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
|| |||||||| || |||| |||| | || || ||||| || ||| |||
Sbjct 18984 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCTTCATGGAGCAGG 18925
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| |
Sbjct 18924 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 18867
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028
|| || | || || || | ||||| || |||||||||||
Sbjct 18866 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 18824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347945413808586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |