Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014 -05-08] 76,189 sequences; 1,132,184,511 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq2837 259 3e-64 seq53598 91.5 1e-13 >seq2837 Length=1096 Score = 259 bits (286), Expect = 3e-64 Identities = 483/701 (69%), Gaps = 10/701 (1%) Strand=Plus/Minus Query 107863 CCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGT 107922 ||| ||||||||| ||||| |||| || ||| |||||| ||||||||||||| Sbjct 696 CCTTCTTCCCCAAGGTCTTTGTGGCTAGCCGCCTGGAAAAGGTGGTCTATGCCTCCTGGT 637 Query 107923 CCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGA 107982 || | |||| |||||||| ||||| ||| | ||| |||| |||||| | ||||||||| Sbjct 636 CCCGGCTGCAGGCTGACCTTAACTGCATGCAGGACCTGCTGCAGAGCCCCGTGCCATGGC 577 Query 107983 AGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCC 108042 ||| | || || || || || || || |||||||| |||||||| |||||||| || | Sbjct 576 GCTACGTCCTCAACACCTGTGGCACCGATTTCCCCATCAAGACCAACGCCGAGATCGTGC 517 Query 108043 TGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCa 108102 ||||| ||| || || |||| ||| || |||||||| ||| || || | | || Sbjct 516 GTGCCCTAAAGGTGCTGCAGGGGCGGAATAGCATGGAGTCAGAGAAGCCCTCGGCCTTCA 457 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGTGACAG-ACACACTGTACCCTACCAGC--A 108159 | | |||||| |||||| | | | ||| | | || || || |||| Sbjct 456 AGCAGGGGCGCTGGCAATACCACCACAAAGTGGGGGAATTCATCGT--CCGGACAGCCGC 399 Query 108160 AGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGG 108219 ||| ||| || || || | || | ||||||||||||| || || || |||||| Sbjct 398 AGA-GAAACTGCCGCCACCCCACAACTCTTCCATGTTCACAGGCAACGCGTACATTGTGG 340 Query 108220 CCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAAT 108279 | | || ||||| || || || |||| || ||||| | || | | || | Sbjct 339 TCACACGGGCCTTCGTGCAGCACATCTTCGAGAACCCCACGGTGCAGCAGTTCCTCGAGT 280 Query 108280 GGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCT--TCAGCGTGCTCC 108337 ||| ||| |||||||| ||||| || || ||| | ||||||||||| | || ||| || Sbjct 279 GGGCCAAGGACACCTACAGCCCTGATGAGCACGTTTGGGCCACCCTCAACCGCATGC-CC 221 Query 108338 GTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCAT 108397 | | |||| || | | || | ||||| || |||||||||||| ||| | Sbjct 220 G-GCGTGCCAGGTGCCATGCCCCAAAATGACAAGTTCCAGCTCTCAGACATGAACGCCCT 162 Query 108398 CGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGC 108457 || | || |||||||||||||||| ||||| || ||||| ||| ||||| || | Sbjct 161 GCCCCGCCTGGTCAAGTGGCAGTACCTGGAGGGCGACACCAGCAAGGGCGCGCCCTACCC 102 Query 108458 ACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTG 108517 |||||| | || || | | | || ||||||| ||||||| || ||| || ||| Sbjct 101 GCCCTGCACCGGCCAGCACCAGCGCTCCGTCTGCATCTACGGGGTGGGCGACGTGCCCTG 42 Query 108518 GATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACC 108558 | | |||||| | || |||||||| || |||||||| |||| Sbjct 41 GCTGCTCCAGCATCACCACCTCTTAGCCAACAAGTTCGACC 1 >seq53598 Length=28275 Score = 91.5 bits (100), Expect = 1e-13 Identities = 228/343 (66%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || || || ||||| ||| || || ||||| ||||| || ||||| || | || Sbjct 19164 CCTCTCAGCAACGAAGAAGCAGAATTTCCAATTGCTTACTCAATTGTGGTTTATCACAAA 19105 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||| | |||| | || || || | | |||||||||||||| | ||||| | Sbjct 19104 ATTGAGATGCTTGATAGACTTCTAAGATCAATCTATGCCCCTCAGAATTTTTACTGCATT 19045 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 || || || ||||| ||||| |||| | || || |||| || |||| || Sbjct 19044 CATGTTGACAAAAAGTCTCCAGAATCTTTTTTTGCTGCTGTGAAGGGAATAGTTTCATGT 18985 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || |||||||| || |||| |||| | || || ||||| || ||| ||| Sbjct 18984 TTTGATAATGTCTTTATTTCCAGCCAGTTAGAGAGTGTTGTGTATGCTTCATGGAGCAGG 18925 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 ||||| || ||| | ||||| ||| |||| | || |||| ||| | | ||||| | Sbjct 18924 GTGCAGGCAGACATTAACTGCATGAAAGA-TCTCTACAGA-AGAAGTTCAAACTGGAAAT 18867 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAA 108028 || || | || || || | ||||| || ||||||||||| Sbjct 18866 ACCTAATAAACCTCTGTGGCATGGACTTTCCTATAAAGACCAA 18824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347945413808586