Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phoenicopterus_20ruber_20ruber_20[genbank_20GCA_5F000687265.1_202014
-05-08] 76,189 sequences; 1,132,184,511 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq66148 122 7e-23
>seq66148
Length=2144
Score = 122 bits (134), Expect = 7e-23
Identities = 153/209 (73%), Gaps = 1/209 (0%)
Strand=Plus/Minus
Query 45130 CAAG-TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCA 45188
|||| || || ||| ||||||||| |||||||||||| ||| ||| | || ||||
Sbjct 683 CAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCA 624
Query 45189 GTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAA 45248
| || || |||||||| |||| || ||| || || ||||| | || ||||||||| |
Sbjct 623 GCTGCTTGCCGGCGAAGATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGA 564
Query 45249 TTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGC 45308
| || ||| || | | | |||| | ||| || |||| ||| || |||||||
Sbjct 563 TCTTGGCCTTGACATTTTCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGC 504
Query 45309 CCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||||||| |||||||||||||| ||||||
Sbjct 503 CCGTCAGGGTCTTCACAAAGATCTGCATG 475
Score = 122 bits (134), Expect = 7e-23
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
|||||||| |||||||||||| ||| ||| | || ||||| || || ||||||||
Sbjct 894 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAG 835
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|||| || ||| || || ||||| | || ||||||||| || || ||| || |
Sbjct 834 ATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTC 775
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| | ||| || |||| ||| || |||||||||||||| |||||||||
Sbjct 774 TCAATGGTGTCACTGGGCTCAACTTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACA 715
Query 45326 AAGATTTGCATG 45337
||||| ||||||
Sbjct 714 AAGATCTGCATG 703
Score = 116 bits (128), Expect = 3e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205
|||||||| |||||||||||| ||| ||| | || ||||| || || ||||||||
Sbjct 438 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTGCCGGCGAAG 379
Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265
|||| || ||| || || ||||| | || ||||||||| || || ||| ||
Sbjct 378 ATCAGCCTCTGCTGATCCGGAGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 319
Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325
| | | |||| | ||| ||||||| ||| || |||||||| ||||| |||||||||
Sbjct 318 TCAATGGTGTCACTGGGCTCAACCTCCAAGGTGATGGTCTTGCCTGTCAGGGTCTTCACA 259
Query 45326 AAGATTTGCATGTT 45339
||||| ||||| ||
Sbjct 258 AAGATCTGCATTTT 245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 394708351564969
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |